SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63123

Length: 252 nt

UniGene Fasta

>sp_v3.0_unigene63123
AATGTGGATTAGGTGTGATCTCATGGTTTAGCATAAAACAATTGTCACTGGCATTCAATACAGCAGAGGCAGAATATATGGCAGCCAGCGAAGCAGTGTGGCTTCGGAAATTGCTTGCAGGGTTATTTAATATAGAGTTAGAGCCAACTTTGATACACTGTGATAATCAAAGTTGTGTGAAGCTTTCAGAGAATCCATTCTTTCATGACAAGTCAAAGCATATAGGGATCAAATACCATTTCAGCCGAGACA

Ace file of the UniGene sp_v3.0_unigene63123

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ	-	-	2.0e-16	47%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	35%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 83 - 542

Fln protein: CGLGVISWFSIKQLSLAFNTAEAEYMAASEAVWLRKLLAGLFNIELEPTLIHCDNQSCVKLSENPFFHDKSKHIGIKYHFSRD

Protein Length: 84

Fln nts: AATGTGGATTAGGTGTGATCTCATGGTTTAGCATAAAACAATTGTCACTGGCATTCAATACAGCAGAGGCAGAATATATGGCAGCCAGCGAAGCAGTGTGGCTTCGGAAATTGCTTGCAGGGTTATTTAATATAGAGTTAGAGCCAACTTTGATACACTGTGATAATCAAAGTTGTGTGAAGCTTTCAGAGAATCCATTCTTTCATGACAAGTCAAAGCATATAGGGATCAAATACCATTTCAGCCGAGACA

Fln Alignment:

G5KS2UX02JP2PH___GVISWFSIKQLSLAFNTAEAEYMAASEA----VWLRKLLAGLFNIELEPTLIHCDNQSCVKLSENPFFHDKSKHIGI
Q9M5J7_______________GAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQ-QVVRLDCEIQSAIFMAKNPAYDSKTNHIDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain