SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63071

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene63071
AATGTGATGAAGATATCAGATGCTCCAGAACTAGGTGACTCACCTTAATCAATCCAGTGGTAGCACTCGGGGTCAATGTTAATGAAGAGAGAGTAGCAGATTGGCTCTGGACACTTCACAGGATTGTTGTGGATGTTGTCAGAACAGACAGACATCTTGAATTCTATGGAGAT

Ace file of the UniGene sp_v3.0_unigene63071

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RAB GTPase activator	-	-	6.0e-09	81%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	69%

Source	Gene names
Sma3	At2g43490; At3g59570/T16L24_120; GSVIVT00034596001; PHYPADRAFT_151822; POPTRDRAFT_810296; T16L24.120;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43490.1	Ypt/Rab-GAP domain of gyp1p superfamily protein chr2:18055106-18058179 REVERSE LENGTH=745	5.0e-13	81%
RefSeq	Arabidopsis thaliana	NP_001118517.1	RAB GTPase activator protein [Arabidopsis thaliana]	7.0e-13	81%
RefSeq	Populus trichocarpa	XP_002309776.1	predicted protein [Populus trichocarpa]	2.0e-12	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1MD42

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 322 aas, your sequence is shorter than subject: 57 - 712

Fln protein: CDEDIRCSRTR*LTLINPVVALGVNVNEERVADWLWTLHRIVVDVVRTDRHLEFYGD

Protein Length: 58

Fln nts: AATGTGATGAAGATATCAGATGCTCCAGAACTAGGTGACTCACCTTAATCAATCCAGTGGTAGCACTCGGGGTCAATGTTAATGAAGAGAGAGTAGCAGATTGGCTCTGGACACTTCACAGGATTGTTGTGGATGTTGTCAGAACAGACAGACATCTTGAATTCTATGGAGAT

Fln Alignment:

G5KS2UX02J7H1Y___LINPVVALGVNVNEERVADWLWTLHRIVVDVVRTDRHLEFYGD
I1MD42_______________MIRSPISQGWPVNEERVSEWLWTLHRIVVDVVRTDSHLEFYED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain