SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63053

Length: 327 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene63053
AAGAACTCTACACAAAAATTAATGGATCTGAATGTGACTAATTTCAGTATGGTACCAGTCAAGCGTAACTATGCATTTGAGCGGTCTGATGTACCAACTGGAGAACATCATGTCTTAAAGTTGAGCTATCCATTCAAGGATCCACCTCTTCCGGCTGATTTTAAAGGAAATCATTTCTCTGCTCTATTTGGTACTCACTCCAGTGCGCTAGAATTATTCCTAATTAAAAGAAGAATACGAGGCCCAACCTGGCTTTCAATTTCCAAAGCTGTCTGCTGCCCAAGTTCATCTCGGGTAAGCTGGTGCAAATTTGAAGCTATTGACATT

Ace file of the UniGene sp_v3.0_unigene63053 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase (Fragment) n=2 Tax=Triticum aestivum RepID=D8L9N3_WHEAT	-	-	7.0e-39	72%
FL-Next	sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	0.0	68%
Sma3	DNA polymerase alpha catalytic subunit	-	-	3.801e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed DNA polymerase.	EC:2.7.7.7	-	4.583e-14	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	4.583e-14	%
Sma3	Pyrimidine metabolism	00240	4.583e-14	%
Sma3	Metabolic pathways	01100	4.583e-14	%

Source	Gene names
Sma3	At5g67100; GSVIVT00019509001; K21H1.14; LOC_Os01g64820; Os01g0868300; OsI_04575; OsJ_04212; P0677H08.20; PHYPADRAFT_60547; POLA; POPTRDRAFT_1083164; RCOM_1409950;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleoside binding	GO:0001882	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	DNA primase activity	GO:0003896	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	-
Sma3	lagging strand elongation	GO:0006273	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	Zinc finger, DNA-directed DNA polymerase, family B, alpha	IPR015088	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3		IPR017966	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G67100.1	ICU2 DNA-directed DNA polymerases chr5:26776994-26785104 FORWARD LENGTH=1524	2.0e-39	65%
RefSeq	Arabidopsis thaliana	NP_201511.2	DNA polymerase alpha catalytic subunit [Arabidopsis thaliana]	2.0e-39	65%
RefSeq	Populus trichocarpa	XP_002310719.1	predicted protein [Populus trichocarpa]	1.96182e-44	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O48653

Fln msg: Distance to subject end: 984 aas, your sequence is shorter than subject: 109 - 1534

Fln protein: KNSTQKLMDLNVTNFSMVPVKRNYAFERSDVPTGEHHVLKLSYPFKDPPLPADFKGNHFSALFGTHSSALELFLIKRRIRGPTWLSISKAVCCPSSSRVSWCKFEAIDI

Protein Length: 110

Fln nts: AAGAACTCTACACAAAAATTAATGGATCTGAATGTGACTAATTTCAGTATGGTACCAGTCAAGCGTAACTATGCATTTGAGCGGTCTGATGTACCAACTGGAGAACATCATGTCTTAAAGTTGAGCTATCCATTCAAGGATCCACCTCTTCCGGCTGATTTTAAAGGAAATCATTTCTCTGCTCTATTTGGTACTCACTCCAGTGCGCTAGAATTATTCCTAATTAAAAGAAGAATACGAGGCCCAACCTGGCTTTCAATTTCCAAAGCTGTCTGCTGCCCAAGTTCATCTCGGGTAAGCTGGTGCAAATTTGAAGCTATTGACATT

Fln Alignment:

G5KS2UX02JHWRX___KLMDLNVTNFSMVPVKRNYAFERSDVPTGEHHVLKLSYPFKDPPLPADFKGNHFSALFGTHSSALELFLIKRRIRGPTWLSISKAVCCPSSSRVSWCKFE
O48653_______________KLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQRVSWCKFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain