SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene63009

Length: 137 nt

UniGene Fasta

>sp_v3.0_unigene63009
CTACAGAGATATCTCTAGAGCTAAAAAGTATTACACAGCTGTATAATGAGTATGCAGTCCCTTTTGAGCTTTGGGAGGTTTGTTTGGAAATTCTGCACTTCTCAAATTATGCTGGGGATGCTGATAGTGGCATTATG

Ace file of the UniGene sp_v3.0_unigene63009

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleoporin 155 [Arabidopsis thaliana] gb\|AEE29235.1\| nucleoporin 155 [Arabidopsis thaliana]	-	-	4.0e-14	77%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	81%

Source	Gene names
Sma3	B1386G10.12; GSVIVT00030587001; Os06g0305200; OsI_22677; OsJ_21091; POPTRDRAFT_656975; RCOM_0598070; VITISV_018140;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	structural constituent of nuclear pore	GO:0017056	Molecular Function	-
Sma3	nucleocytoplasmic transport	GO:0006913	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Nucleoporin, Nup155-like	IPR004870	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14850.1	NUP155 nucleoporin 155 chr1:5116921-5123259 REVERSE LENGTH=1464	6.0e-19	77%
RefSeq	Arabidopsis thaliana	NP_172938.2	nucleoporin 155 [Arabidopsis thaliana]	7.0e-19	77%
RefSeq	Populus trichocarpa	XP_002312462.1	predicted protein, partial [Populus trichocarpa]	2.0e-20	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HFD8

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 45 - 1496

Fln protein: TEISLELKSITQLYNEYAVPFELWEVCLEILHFSNYAGDADSGIM

Protein Length: 46

Fln nts: CTACAGAGATATCTCTAGAGCTAAAAAGTATTACACAGCTGTATAATGAGTATGCAGTCCCTTTTGAGCTTTGGGAGGTTTGTTTGGAAATTCTGCACTTCTCAAATTATGCTGGGGATGCTGATAGTGGCATTATG

Fln Alignment:

G5KS2UX02IUMQO___EISLELKSITQLYNEYAVPFELWEVCLEILHFSNYAGDADSGIM
F6HFD8_______________EISLDLKSITQLYNEYAVPFELWEICLEMLYFANYSGDADSSIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain