SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62977

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene62977
AATGTCTGTGGTTGCATTGAATCTCTCTCATCTGAACCTCGGAGGAGAAATTTCCCCAGTGTTTGGAAATCTAAAAAGCTTAGAGTCAATTGTTCTGCATGCAGTGACCTTAAAGGAAATGGTCTCTCAGGCAAAATTCCGGACGAGATTGGAGATTGCTCTGCATTGAAAGTCTTAGATGTCTCTTTAAATTATTTATA

Ace file of the UniGene sp_v3.0_unigene62977

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor protein kinase [Sorghum bicolor]	-	-	1.0e-11	74%
FL-Next	sp=LRR receptor-like serine/threonine-protein kinase ERL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%

Source	Gene names
Sma3	OSJNBa0016O19.39; Os06g0203800; OsI_22078;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G62230.1	ERL1 ERECTA-like 1 chr5:24996433-25002130 FORWARD LENGTH=966	1.0e-12	70%
RefSeq	Arabidopsis thaliana	NP_201029.1	LRR receptor-like serine/threonine-protein kinase ERL1 [Arabidopsis thaliana]	2.0e-12	70%
RefSeq	Populus trichocarpa	XP_002309462.1	leucine-rich repeat protein kinase [Populus trichocarpa]	2.0e-13	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: C0LGW6

Fln msg: Separated hits, possible frame ERROR between 97 and 106, Distance to subject end: 834 aas, your sequence is shorter than subject: 66 - 966

Fln protein: MSVVALNLSHLNLGGEISPVFGNLKSLESIVxxxxDLKGNGLSGKIPDEIGDCSALKVLDVSLNYL

Protein Length: 67

Fln nts: AATGTCTGTGGTTGCATTGAATCTCTCTCATCTGAACCTCGGAGGAGAAATTTCCCCAGTGTTTGGAAATCTAAAAAGCTTAGAGTCAATTGTTCTxxxxxxxxxTGACCTTAAAGGAAATGGTCTCTCAGGCAAAATTCCGGACGAGATTGGAGATTGCTCTGCATTGAAAGTCTTAGATGTCTCTTTAAATTATTTATA

Fln Alignment:

G5KS2UX02GLSI6___SVVALNLSHLNLGGEISPVFGNLKSLESIVLxxxDLKGNGLSGKIPDEIGDCSALKVLDVSLNYL
C0LGW6_______________SVVSLNLSSLNLGGEISPAIGDLRNLQSIDLxxxDLQGNKLAGQIPDEIGNCASLVYLDLSENLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain