SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62894

Length: 220 nt

UniGene Fasta

>sp_v3.0_unigene62894
AATGTTAATAGAGTATTGCCATTATTCCAAACCAGAACAAGAACTTTGGCTGTCATTGGACCCAATGCAGATGTCACCAACGTCATGATTGGCAACTATGCAGGTATACCATGTAGATACACAACACCCCGACAAGGTCTGGGTAAATATGCAACAAGAACAAATGGTGTTAGAAGTAACAGCTGCATCAAGAGGACCAGTGATACTTGTAGTGATGTCA

Ace file of the UniGene sp_v3.0_unigene62894

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Putative beta-D-xylosidase; AltName: Full=PpAz152 gb\|AAM00218.1\|AF362990_1 beta-D-xylosidase [Prunus persica]	-	-	1.0e-11	66%
FL-Next	sp=Beta-D-xylosidase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Beta-glucosidase, putative	-	-	2.076e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	1.111e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Cyanoamino acid metabolism	00460	1.111e-08	%
Sma3	Starch and sucrose metabolism	00500	1.111e-08	%
Sma3	Phenylpropanoid biosynthesis	00940	1.111e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.111e-08	%

Source	Gene names
Sma3	ARF; At5g49360; GSVIVT00008402001; GSVIVT00008537001; GSVIVT00027149001; GSVIVT00033109001; GSVIVT00038386001; JPR XYL; LEXYL1; POPTRDRAFT_833653; PpARF2; RCOM_0175560; RCOM_1347430; RCOM_1752040; RsAraf1; Xyl1; xyl;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G49360.1	BXL1, ATBXL1 beta-xylosidase 1 chr5:20012179-20016659 REVERSE LENGTH=774	3.0e-14	62%
RefSeq	Arabidopsis thaliana	NP_199747.1	beta-xylosidase 1 [Arabidopsis thaliana]	4.0e-14	62%
RefSeq	Populus trichocarpa	XP_002316021.1	predicted protein [Populus trichocarpa]	2.0e-13	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FGY1

Fln msg: Distance to subject end: 297 aas, your sequence is shorter than subject: 73 - 774

Fln protein: NVNRVLPLFQTRTRTLAVIGPNADVTNVMIGNYAGIPCRYTTPRQGLGKYATRTNGVRSNSCIKRTSDTCSDV

Protein Length: 74

Fln nts: AATGTTAATAGAGTATTGCCATTATTCCAAACCAGAACAAGAACTTTGGCTGTCATTGGACCCAATGCAGATGTCACCAACGTCATGATTGGCAACTATGCAGGTATACCATGTAGATACACAACACCCCGACAAGGTCTGGGTAAATATGCAACAAGAACAAATGGTGTTAGAAGTAACAGCTGCATCAAGAGGACCAGTGATACTTGTAGTGATGTCA

Fln Alignment:

G5KS2UX02GWHNV___NVNRVLPLFQTRTRTLAVIGPNADVTNVMIGNYAGIPCRYTTPRQGLGKYA
Q9FGY1_______________NSARSLPLSPRRHRTVAVIGPNSDVTETMIGNYAGKACAYTSPLQGISRYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain