SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62851

Length: 164 nt

UniGene Fasta

>sp_v3.0_unigene62851
AATGTCTCAGAATGCTGGAACATATATAGCATTGTCAAGCATCTATGCTGCATCTGGCATGTTGCACGATGCATCAAAGGTGAGACTAATGATGAAAAACAGAGGACTAAGAAAAGAGCCAGGCTGCAGCTGGATTAACATCAAAGATACGGTGCATGCTTTCG

Ace file of the UniGene sp_v3.0_unigene62851

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group]	-	-	7.0e-10	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G35030.1	Pentatricopeptide repeat (PPR) superfamily protein chr2:14761080-14762963 REVERSE LENGTH=627	2.0e-13	47%
RefSeq	Arabidopsis thaliana	NP_181048.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	3.0e-13	47%
RefSeq	Populus trichocarpa	XP_002302000.1	predicted protein [Populus trichocarpa]	6.0e-15	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 54 - 370

Fln protein: MSQNAGTYIALSSIYAASGMLHDASKVRLMMKNRGLRKEPGCSWINIKDTVHAF

Protein Length: 55

Fln nts: AATGTCTCAGAATGCTGGAACATATATAGCATTGTCAAGCATCTATGCTGCATCTGGCATGTTGCACGATGCATCAAAGGTGAGACTAATGATGAAAAACAGAGGACTAAGAAAAGAGCCAGGCTGCAGCTGGATTAACATCAAAGATACGGTGCATGCTTTCG

Fln Alignment:

G5KS2UX02HU66Q___QNAGTYIALSSIYAASGMLHDASKVRLMMKNRGLRKEPGCSWINIKDTVHAF
A9P0W0_______________ENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain