SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62826

Length: 299 nt

UniGene Fasta

>sp_v3.0_unigene62826
AATGTTGTATATAAAACAACCCGAAGGCTTCGAAACTCATGAGAAGAAAACTCATGTTTGCAGGTTAAAGAAAGCCCTATACGAGCTCAAGCAGGCACCGAGAGCATGGTATGGTCGAATTGATAGTTACTTGCAGCACTTGGGATTTGTCAAAAATGATGTTGATCCCAATCTCTACTATTTATTGGTAGAGAATGAGCCCCTTATTCTGGTACTATATGTAGATGACCTGTTCCTAACTGGGTCATCTAGGCTGATCCAGGAGTGCAAGAAGAATCTTGAAGCCGAATTCGATGATG

Ace file of the UniGene sp_v3.0_unigene62826

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=4 Tax=Ginkgo biloba RepID=Q06290_GINBI	-	-	5.0e-26	69%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	42%
Sma3	Reverse transcriptase	-	-	6.72e-22	-

Source	Gene names
Sma3	AT4g16010; At2g15650; VITISV_014188; VITISV_020777; VITISV_032906; VITISV_043230; dl4045w; pol;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Distance to subject end: 248 aas, your sequence is shorter than subject: 99 - 542

Fln protein: MLYIKQPEGFETHEKKTHVCRLKKALYELKQAPRAWYGRIDSYLQHLGFVKNDVDPNLYYLLVENEPLILVLYVDDLFLTGSSRLIQECKKNLEAEFDD

Protein Length: 100

Fln nts: AATGTTGTATATAAAACAACCCGAAGGCTTCGAAACTCATGAGAAGAAAACTCATGTTTGCAGGTTAAAGAAAGCCCTATACGAGCTCAAGCAGGCACCGAGAGCATGGTATGGTCGAATTGATAGTTACTTGCAGCACTTGGGATTTGTCAAAAATGATGTTGATCCCAATCTCTACTATTTATTGGTAGAGAATGAGCCCCTTATTCTGGTACTATATGTAGATGACCTGTTCCTAACTGGGTCATCTAGGCTGATCCAGGAGTGCAAGAAGAATCTTGAAGCCGAATTCGATGATG

Fln Alignment:

G5KS2UX02JOROL___LYIKQPEGFETHEKKTHVCRLKKALYELKQAPRAWYGRIDSYLQHLGFVKNDVDPNLYYLLVENEPLILVLYVDDLFLTGSSR-LIQECKKNLEAEFD
Q9M5J7_______________IYMKQPEGFVVKGNKELVCKINKSLCGVKQSPRMWYQKFDTYILRLGFVISRADHCVYSKQVGNHFIYVVLYVDDMLLVGNNMDVIKEVKSQLSSKFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain