SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62718

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene62718
AATGTAGAAGACTCTTACTTCATGACAACAAGTTATCAGGGAGCATACCTGCCATCTTAGGAAGCTATACAAATTTGGAATTGCTTGACCTGTCTCACAATATGCTCACTAGAAGAATTCCATGAGAAATTGCTAAACTTTCTAATCTACAATTCTATTTGAACTTGTCATGGAATTTATTAGATGGCTCGTTGCCCATGGAGATTAGTAAAATTGCAATGGCTCAAGCTATAGACATTTCATCCAATCACTTGACTGGGCCCATTCCACCTACACTTGG

Ace file of the UniGene sp_v3.0_unigene62718

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana] sp\|Q9ZUI0.1\|Y2241_ARATH RecName: Full=Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130; Flags: Precursor gb\|AAD03374.1\| putative receptor-	-	-	3.0e-20	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Flagellin-sensing 2-like protein	-	-	1.732e-09	-

Source	Gene names
Sma3	At2g24130; FLS2; GSVIVT00017170001; GSVIVT00021362001; LOC_Os03g54900; OJ1740_D06.39; OSJNBb0081K01.8; Os03g0756200; Os06g0186300; Os09g0423200; OsI_13592; OsI_21950; OsI_31411; OsJ_12640; OsJ_20380; OsJ_20381; OsJ_29408; P0418B08.10; P0568D10.11; P0568D1

Source	GOs	Term	Type	Identity
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein chr2:10258148-10261220 FORWARD LENGTH=980	3.0e-25	56%
RefSeq	Arabidopsis thaliana	NP_179990.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	4.0e-25	56%
RefSeq	Populus trichocarpa	XP_002309364.1	predicted protein [Populus trichocarpa]	4.0e-26	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 92 - 551

Fln protein: CRRLLLHDNKLSGSIPAILGSYTNLELLDLSHNMLTRRIP*EIAKLSNLQFYLNLSWNLLDGSLPMEISKIAMAQAIDISSNHLTGPIPPTL

Protein Length: 93

Fln nts: AATGTAGAAGACTCTTACTTCATGACAACAAGTTATCAGGGAGCATACCTGCCATCTTAGGAAGCTATACAAATTTGGAATTGCTTGACCTGTCTCACAATATGCTCACTAGAAGAATTCCATGAGAAATTGCTAAACTTTCTAATCTACAATTCTATTTGAACTTGTCATGGAATTTATTAGATGGCTCGTTGCCCATGGAGATTAGTAAAATTGCAATGGCTCAAGCTATAGACATTTCATCCAATCACTTGACTGGGCCCATTCCACCTACACTTGG

Fln Alignment:

G5KS2UX02F2YOB___RRLLLHDNKLSGSIPAILGSYTNLELLDLSHNMLTRRIP*EIAKLSNLQFYLNLSWNLLDGSLPMEISKIAMAQAIDISSNHLTGPIPPTL
B8LRW5_______________RDLYLDQNELSGNISPSIGDCLRLEVLDLSHNRFHGNIPRTVAGLRNLQFYFNLSSNLLEVSLPLEISKMTMVQEINVAVNRLTGSIPSGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain