SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62699

Length: 250 nt

UniGene Fasta

>sp_v3.0_unigene62699
AATGTCTTATTCCAAAAGCACTGTCTAACTGTACAGACCTTCAATGGATCAGACTCTCAAAGAACAATTTGACAGGGATTATACCAACAGAAATTCGGCCGTCTAGGCAAGTTGAAATACCTCTTCCTGGTCAACAATAGTCTGAGTGGAAGCATTCCAGCCTCCCTGAGCAACTGCACGTCTCTCCAAGAGTTGTCCATTGGATATAACGATCTCAGTGGTCCAATTCCTTCAGTTTTGGGTCTGATCA

Ace file of the UniGene sp_v3.0_unigene62699

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative receptor-like protein kinase [Oryza sativa Japonica Group] gb\|AAM44864.1\|AC098694_3 Putative receptor-like protein kinase [Oryza sativa Japonica Group] gb\|AAP51860.1\| Serine/threonine-protein kinase BRI1-like 2 precursor, putative [Oryza sativa J	-	-	5.0e-11	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G24240.1	Leucine-rich repeat receptor-like protein kinase family protein chr3:8780551-8784150 FORWARD LENGTH=1141	1.0e-12	45%
RefSeq	Arabidopsis thaliana	NP_189066.1	receptor-like protein kinase 2 [Arabidopsis thaliana]	2.0e-12	45%
RefSeq	Populus trichocarpa	XP_002312487.1	predicted protein [Populus trichocarpa]	1.0e-12	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 445 aas, your sequence is shorter than subject: 83 - 818

Fln protein: CLIPKALSNCTDLQWIRLSKNNLTxxxxxxxxGRLGKLKYLFLVNNSLSGSIPASLSNCTSLQELSIGYNDLSGPIPSVLGLI

Protein Length: 84

Fln nts: AATGTCTTATTCCAAAAGCACTGTCTAACTGTACAGACCTTCAATGGATCAGACTCTCAAAGAACAATTTGACAxxxxxxxxxxxxxxxxxxxxxxxxGGCCGTCTAGGCAAGTTGAAATACCTCTTCCTGGTCAACAATAGTCTGAGTGGAAGCATTCCAGCCTCCCTGAGCAACTGCACGTCTCTCCAAGAGTTGTCCATTGGATATAACGATCTCAGTGGTCCAATTCCTTCAGTTTTGGGTCTGATCA

Fln Alignment:

G5KS2UX02H8AZE___IPKALSNCTDLQWIRLSKNNLTGIIPTEIRxxxxxxxGRLGKLKYLFLVNNSLSGSIPASLSNCTSLQELSIGYNDLSGPIPSVLG
B8LQX6_______________IPTSLSNCTSLQGLSIGYNSLTGPIPSVLSxxxxxxxGLLQNLQKLYLHTNKLESTIPPSLGNCSSLENLFLGDNRLSGNIPSQFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain