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UniGene Name: sp_v3.0_unigene62683
Length: 187 nt
 UniGene Fasta
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| >sp_v3.0_unigene62683
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Ace file of the UniGene sp_v3.0_unigene62683
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Unassigned protein | - | - | 0.0 | - |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 74% |
| Sma3 | WD-repeat protein, putative | - | - | 1.509e-09 | - |
| Source | Gene names |
|---|---|
| Sma3 | At1g15750; At1g80490; At3g15880; At5g27030; CTV.2; F15P11.3; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; LOC_Os03g14980; MtrDRAFT_AC147963g18v2; Os01g0254100; Os03g0254700; Os08g0162100; OsI_01216 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | transcription repressor activity | GO:0016564 | Molecular Function | 0.0 | - |
| Sma3 | protein homodimerization activity | GO:0042803 | Molecular Function | 0.0 | - |
| Sma3 | response to auxin stimulus | GO:0009733 | Biological Process | 0.0 | - |
| Sma3 | xylem and phloem pattern formation | GO:0010051 | Biological Process | 0.0 | - |
| Sma3 | primary shoot apical meristem specification | GO:0010072 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | WD40 repeat | IPR001680 | - | 0.0 | - |
| Sma3 | LisH dimerisation motif | IPR006594 | - | 0.0 | - |
| Sma3 | CTLH, C-terminal LisH motif | IPR006595 | - | 0.0 | - |
| Sma3 | LisH dimerisation motif, subgroup | IPR013720 | - | 0.0 | - |
| Sma3 | WD40/YVTN repeat-like-containing domain | IPR015943 | - | 0.0 | - |
| Sma3 | F-box associated interaction domain | IPR017451 | - | 0.0 | - |
| Sma3 | WD40-repeat-containing domain | IPR017986 | - | 0.0 | - |
| Sma3 | Cytochrome b5, heme-binding site | IPR018506 | - | 0.0 | - |
| Sma3 | WD40 repeat, conserved site | IPR019775 | - | 0.0 | - |
| Sma3 | IPR019782 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT1G15750.1 | WSIP1, TPL Transducin family protein / WD-40 repeat family protein chr1:5415086-5420359 REVERSE LENGTH=1131 | 4.0e-26 | 75% |
| RefSeq | Arabidopsis thaliana | NP_563981.1 | protein TOPLESS [Arabidopsis thaliana] | 6.0e-26 | 75% |
| RefSeq | Populus trichocarpa | XP_002329020.1 | predicted protein, partial [Populus trichocarpa] | 3.0e-25 | 74% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: A9NV83
Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 62 - 300
Fln protein:
M
Protein Length:
63
Fln nts:
A
Fln Alignment:
G5KS2UX02IEHWJ___MSFPGLKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHACVPSNEARTP-PANSSLVG
A9NV83_______________LQFPALKAARLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCTPSNGCRVPMPSSNPLMG
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
