SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62644

Length: 302 nt

UniGene Fasta

>sp_v3.0_unigene62644
AATGTATGAAGATAATTTCATTGGTGATAATGGGGTGTGGAGGAGTTGGTCGGCAGCTGATTCACCACATTGTCAACACAAGAGAGTTGCATGCCTCTCAGGGAATACATTTAAGAGTGCTGGGTGTTTGTGACTCCCAATCTCTACTAATGGCTGCAAAAGTTCGAGAGGCAGAGCTAAGTGATGAATGCTTGAAGAACATTTGTCATCTAAAGTCTTCTGGCTCTCCTCTATCATCATTGGATTCAATTGATGGATTTCGGGTATTTGTAGTGATCAGACCGTCGAGCTGCTGTATAAAG

Ace file of the UniGene sp_v3.0_unigene62644

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homoserine dehydrogenase n=1 Tax=Picea sitchensis RepID=D5AEG5_PICSI	-	-	6.0e-30	75%
FL-Next	sp=Homoserine dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Homoserine dehydrogenase	-	-	1.73e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Homoserine dehydrogenase.	EC:1.1.1.3	-	5.288e-14	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260	5.288e-14	%
Sma3	Cysteine and methionine metabolism	00270	5.288e-14	%
Sma3	Lysine biosynthesis	00300	5.288e-14	%
Sma3	Biosynthesis of plant hormones	01070	5.288e-14	%
Sma3	Metabolic pathways	01100	5.288e-14	%
Sma3	Biosynthesis of secondary metabolites	01110	5.288e-14	%

Source	Gene names
Sma3	At5g21060; LOC_Os11g03470; Os11g0128800; OsI_07919; OsJ_32797; POPTRDRAFT_594921; RCOM_1108890; SDM1_53t00020;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	homoserine dehydrogenase activity	GO:0004412	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cellular amino acid biosynthetic process	GO:0008652	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Homoserine dehydrogenase, catalytic	IPR001342	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21060.2	Glyceraldehyde-3-phosphate dehydrogenase-like family protein chr5:7149153-7152745 REVERSE LENGTH=378	2.0e-20	55%
RefSeq	Arabidopsis thaliana	NP_197605.1	glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana]	1.0e-20	54%
RefSeq	Populus trichocarpa	XP_002328225.1	predicted protein [Populus trichocarpa]	1.0e-22	61%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG5

Fln msg: Distance to subject end: 280 aas, atg_distance in limit (1-15): atg_distance = 14, your sequence is shorter than subject: 99 - 395

Fln protein: MKIISLVIMGCGGVGRQLIHHIVNTRELHASQGIHLRVLGVCDSQSLLMAAKVREAELSDECLKNICHLKSSGSPLSSLDSIDGFRVFVVIRPSSCCIK

Protein Length: 100

Fln nts: A_-_ATGTATGAAGATAATTTCATTGGTGATAATGGGGTGTGGAGGAGTTGGTCGGCAGCTGATTCACCACATTGTCAACACAAGAGAGTTGCATGCCTCTCAGGGAATACATTTAAGAGTGCTGGGTGTTTGTGACTCCCAATCTCTACTAATGGCTGCAAAAGTTCGAGAGGCAGAGCTAAGTGATGAATGCTTGAAGAACATTTGTCATCTAAAGTCTTCTGGCTCTCCTCTATCATCATTGGATTCAATTGATGGATTTCGGGTATTTGTAGTGATCAGACCGTCGAGCTGCTGTATAAAG

Fln Alignment:

G5KS2UX02JLNOT___MKIISLVIMGCGGVGRQLIHHIVNTRELHASQGIHLRVLGVCDSQSLLMAAKVREAELSDECLKNICHXXXXXXXXXXXXXI--DGFRVFVV
D5AEG5_______________MKIIPLLIMGCGGVGRQLIHHIVNTRELHASQGIHLRVLGVCDTQSLLMATNVPEAELSDECLKNICHLKSSGSPLSSLDSIGNDGFQVFAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain