SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62621

Length: 255 nt

UniGene Fasta

>sp_v3.0_unigene62621
AATGTTTTTATTTTGGTAGGAACACTCTTTATTGCCAAGGCAATAGAGTCATTATCTCAAAGGCAACGGTGTTTTGGCACTAGACGGATTGGTCTGCAAATGCGCTCTTCACTCATTGCAGCAATCTATCAGAAACAACTAAAGTTGTCCAATGAAGCTAAACAGGTGCATACAGCAGGAGGGATCATCAATTATATGGCGGTAGATGCTTACCGTATTGGGGAATTTCCCTTCTCGTTTCATCAGACTTGGACT

Ace file of the UniGene sp_v3.0_unigene62621

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter, putative [Oryza sativa Japonica Group] gb\|EEE51671.1\| hypothetical protein OsJ_33016 [Oryza sativa Japonica Group]	-	-	2.0e-22	64%
FL-Next	sp=ABC transporter C family member 10; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%
Sma3	Multidrug resistance protein ABC transporter family	-	-	5.86e-14	-

Source	Gene names
Sma3	At3g59140; F17J16.190; GSVIVT00002478001; GSVIVT00002482001; GSVIVT00002485001; GSVIVT00002487001; GSVIVT00002490001; GSVIVT00006470001; GSVIVT00006491001; GSVIVT00034195001; GSVIVT00034196001; GSVIVT00034197001; LOC_Os11g05700; LOC_Os12g37580; MRP10; MRP

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G59140.1	ATMRP14, MRP14, ABCC10 multidrug resistance-associated protein 14 chr3:21863519-21868701 REVERSE LENGTH=1453	3.0e-23	56%
RefSeq	Arabidopsis thaliana	NP_191473.2	multidrug resistance-associated protein 14 [Arabidopsis thaliana]	4.0e-23	56%
RefSeq	Populus trichocarpa	XP_002297990.1	multidrug resistance protein ABC transporter family, partial [Populus trichocarpa]	4.0e-28	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LYS2

Fln msg: Distance to subject end: 1047 aas, your sequence is shorter than subject: 85 - 1453

Fln protein: NVFILVGTLFIAKAIESLSQRQRCFGTRRIGLQMRSSLIAAIYQKQLKLSNEAKQVHTAGGIINYMAVDAYRIGEFPFSFHQTWT

Protein Length: 86

Fln nts: AATGTTTTTATTTTGGTAGGAACACTCTTTATTGCCAAGGCAATAGAGTCATTATCTCAAAGGCAACGGTGTTTTGGCACTAGACGGATTGGTCTGCAAATGCGCTCTTCACTCATTGCAGCAATCTATCAGAAACAACTAAAGTTGTCCAATGAAGCTAAACAGGTGCATACAGCAGGAGGGATCATCAATTATATGGCGGTAGATGCTTACCGTATTGGGGAATTTCCCTTCTCGTTTCATCAGACTTGGACT

Fln Alignment:

G5KS2UX02HDJIG___ILVGTLFIAKAIESLSQRQRCFGTRRIGLQMRSSLIAAIYQKQLKLSNEAKQVHTAGGIINYMAVDAYRIGEFPFSFHQTWT
Q9LYS2_______________VLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSGSEIMNYATVDAYRIGEFPYWFHQLWT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain