SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62617

Length: 233 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene62617
TCTTCTCAGCGCTGGTACCATGTTCCTCGATCGTGGCTGCAGCCTTCGGGAAATGTGTTGGTGCTGTTTGAGGAAATCGGAGGAAATCCTTCTGGAGTTTCACTTGTTAGAAGAGCAGACTCTTCTCCGTGAGCTTGAAGACATGGGTTTCAATCAGAGGATGCTGAATGCTGAACTACTCCGAAAACATAATTATGATTTACAGAAAACTCTTGATGATCTTTGTAGACATT

Ace file of the UniGene sp_v3.0_unigene62617 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=B8LLU8_PICSI	-	-	6.0e-14	88%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Beta-galactosidase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-galactosidase.	EC:3.2.1.23	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Galactose metabolism	00052	%
Sma3	Other glycan degradation	00511	%
Sma3	Glycosaminoglycan degradation	00531	%
Sma3	Sphingolipid metabolism	00600	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	AT3G13750; At1g45130; At3g13750; At3g52840; At4g36360; BG1; BGAL1; BGAL2; BGAL3; BGAL5; C7A10.1000; CARSR12; F23E13.200; F27F5.20; F8J2.10; GAL1; GAL2; GSVIVT00016563001; GSVIVT00024515001; GSVIVT00034164001; GSVIVT00036860001; JP-GAL; LOC_Os01g39830; LOC

Source	GOs	Term	Type	Identity
Sma3	beta-galactosidase complex	GO:0009341	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	beta-galactosidase activity	GO:0004565	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	coenzyme A metabolic process	GO:0015936	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13750.1	BGAL1 beta galactosidase 1 chr3:4511192-4515756 FORWARD LENGTH=847	2.0e-15	63%
RefSeq	Arabidopsis thaliana	NP_187988.1	beta galactosidase 1 [Arabidopsis thaliana]	2.0e-15	63%
RefSeq	Populus trichocarpa	XP_002329051.1	predicted protein [Populus trichocarpa]	7.0e-15	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLU8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 76 aas, your sequence is shorter than subject: 44 - 836

Fln protein: SSQRWYHVPRSWLQPSGNVLVLFEEIGGNPSGVSLVRRADSSP*

Protein Length: 45

Fln nts: TCTTCTCAGCGCTGGTACCATGTTCCTCGATCGTGGCTGCAGCCTTCGGGAAATGTGTTGGTGCTGTTTGAGGAAATCGGAGGAAATCCTTCTGGAGTTTCACTTGTTAGAAGAGCAGACTCTTCTCCGTGAGCTTGAAGACATGGGTTTCAATCAGAGGATGCTGAATGCTGAACTACTCCGAAAACATAATTATGATTTACAGAAAACTCTTGATGATCTTTGTAGACATT

Fln Alignment:

G5KS2UX02HF2QT___SSQRWYHVPRSWLQPSGNVLVLFEEIGGNPSGVSLVRRADSS
B8LLU8_______________SSQRWYHVPRSWLQPSGNTLVLFEEIGGNPSGVSLVTRSVDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain