UniGene Name: sp_v3.0_unigene62553
Length: 183 nt
UniGene Fasta |
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>sp_v3.0_unigene62553
A |
Ace file of the UniGene sp_v3.0_unigene62553 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | PREDICTED: DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Acyrthosiphon pisum RepID=UPI00017918AB | - | - | 3.0e-23 | 85% |
FL-Next | sp=DNA-directed RNA polymerase subunit beta; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. | - | - | 0.0 | 45% |
Sma3 | DNA-directed RNA polymerase | - | - | 6.759e-31 | - |
Source | ECs | Term | Type | e value | Identity |
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Sma3 | DNA-directed RNA polymerase. | EC:2.7.7.6 | - | 1.435e-28 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Purine metabolism | 00230 | 1.435e-28 | % | |
Sma3 | Pyrimidine metabolism | 00240 | 1.435e-28 | % | |
Sma3 | Metabolic pathways | 01100 | 1.435e-28 | % |
Source | Gene names |
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Sma3 | CHLREDRAFT_129857; GSVIVT00002040001; GSVIVT00018575001; LOC_Os03g28960; LOC_Os03g44484; MICPUCDRAFT_22087; MICPUCDRAFT_31670; MICPUN_86086; MICPUN_93697; OSJNBb0041J20.7; OSTLU_13673; OSTLU_39835; Os03g0403100; Os03g0646800; OsI_11967; OsI_12811; OsJ_111 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | DNA-directed RNA polymerase activity | GO:0003899 | Molecular Function | 0.0 | - |
Sma3 | ribonucleoside binding | GO:0032549 | Molecular Function | 0.0 | - |
Sma3 | GO:0006350 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Domain of unknown function DUF221 | IPR003864 | - | 0.0 | - |
Sma3 | DNA-directed RNA polymerase, subunit 2, domain 6 | IPR007120 | - | 0.0 | - |
Sma3 | RNA polymerase, beta subunit, conserved site | IPR007121 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb2, domain 7 | IPR007641 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb2, domain 2 | IPR007642 | - | 0.0 | - |
Sma3 | RNA polymerase, beta subunit, protrusion | IPR007644 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb2, domain 3 | IPR007645 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb2, domain 4 | IPR007646 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb2, domain 5 | IPR007647 | - | 0.0 | - |
Sma3 | RNA polymerase Rpb2, OB-fold | IPR014724 | - | 0.0 | - |
Sma3 | DNA-directed RNA polymerase, subunit 2 | IPR015712 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT5G45140.1 | NRPC2 nuclear RNA polymerase C2 chr5:18247416-18257713 REVERSE LENGTH=1161 | 4.0e-25 | 75% |
RefSeq | Arabidopsis thaliana | NP_199327.4 | DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana] | 5.0e-25 | 75% |
RefSeq | Populus trichocarpa | XP_002321356.1 | predicted protein, partial [Populus trichocarpa] | 7.0e-26 | 76% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: G8J478
Fln msg: Distance to subject end: 207 aas, your sequence is shorter than subject: 61 - 1075
Fln protein:
N
Protein Length:
62
Fln nts:
A
Fln Alignment:
G5KS2UX02JOH5P___VKMNLRQHRRPEVGDKFSSRHGQKGVVGLIANQEDMPFNLEGICPDLIMNPHGFPSRMTV
G8J478_______________VHVYISQKRKIQVGDKVSGRHGNKGIISIVLPRQDMPYLQNGIPVDMVLNPLGVPSRMNV
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain