SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62401

Length: 198 nt

UniGene Fasta

>sp_v3.0_unigene62401
GCAAAAATTGGTTCCAGTGCCCGGGGATGTGACGCAACCTAATTTAGGAATTCAAGAAGAGATTGCCAATCAGCTCGTAAAGGAGGTAGACATCATTGTGAGCTCGGCCGCCGTCACAACATTCGATGAAAGGTACGATTTCTTGATGCAAACTAACACACTAGGAGTTTATCGCCTTTTGGAGTTTGGCAAACGCTG

Ace file of the UniGene sp_v3.0_unigene62401

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare RepID=F2ECQ6_HORVD	-	-	5.0e-13	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	cDNA clone:J023102A19, full insert sequence	-	-	7.31e-06	-

Source	Gene names
Sma3	LOC_Os03g07140; OSJNBa0091P11.14; Os03g0167600; OsI_10168;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Male sterility	IPR004262	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11980.1	MS2, FAR2 Jojoba acyl CoA reductase-related male sterility protein chr3:3814484-3816927 FORWARD LENGTH=616	2.0e-14	46%
RefSeq	Arabidopsis thaliana	NP_187805.1	fatty acyl-CoA reductase 2 [Arabidopsis thaliana]	2.0e-14	46%
RefSeq	Populus trichocarpa	XP_002323348.1	predicted protein [Populus trichocarpa]	5.0e-17	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NSE8

Fln msg: Distance to subject end: 206 aas, your sequence is shorter than subject: 65 - 296

Fln protein: QKLVPVPGDVTQPNLGIQEEIANQLVKEVDIIVSSAAVTTFDERYDFLMQTNTLGVYRLLEFGKR

Protein Length: 66

Fln nts: GCAAAAATTGGTTCCAGTGCCCGGGGATGTGACGCAACCTAATTTAGGAATTCAAGAAGAGATTGCCAATCAGCTCGTAAAGGAGGTAGACATCATTGTGAGCTCGGCCGCCGTCACAACATTCGATGAAAGGTACGATTTCTTGATGCAAACTAACACACTAGGAGTTTATCGCCTTTTGGAGTTTGGCAAACGCTG

Fln Alignment:

G5KS2UX02IA1QE___QKLVPVPGDVTQP-NLGIQEEIANQ-LVKEVDIIVSSAAVTTFDERYDFLMQTNTLGVYRLLEFGKR
A9NSE8_______________QKVVPVVGDVAGGHNLGIDKESTREHLWNILDAIVNNAASTMFDDRYDISLNVNTRGAENIVEFAKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain