SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62386

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene62386
AATGTACATTTGAGAGTGCAGAAGATGCTGGTAGAGCATACGATGATGCTGCTTTAAAGTTTCGAGGGTCAAAGGCGAAATTGAACTTCCCGGAAAGAATCAACAACCTGGACGGCGATCTTACCGGTATGAACATCCCAAAGCAAGAAACCCCAGAAATTGCCGACTTCGCTATTCAAGTTGCACGCGCAACATCCAGCCTATCTCTGCCGACCAATGGCGTTAATTTGTCGGCAGCGCCCTACGGCCGCCGTAGTCTACACGTGGAAAGCGTAAATGGAGAAGCTCATTCTAACAGACTACACCAAGTGATTCCGCGGCATTTCATCCCAGCTGATT

Ace file of the UniGene sp_v3.0_unigene62386

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ethylene-responsive transcription factor ERF114 [Arabidopsis thaliana] sp\|Q9FH54.1\|EF114_ARATH RecName: Full=Ethylene-responsive transcription factor ERF114 dbj\|BAB08875.1\| AP2 domain transcription factor-like [Arabidopsis thaliana] gb\|AAT44929.1\| putativ	-	-	7.0e-07	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	At1g43160; At5g07310; ERF108; ERF115; ERF70; ERF72; F1I21.18; GSVIVT00019350001; Os01g0868000; Os05g0437100; Os12g0168100; OsI_04572; OsI_20095; OsI_37608; OsJ_18670; OsJ_35354; P0677H08.10; POPTRDRAFT_750979; POPTRDRAFT_773280; RAP2-6; RCOM_0131910; VITI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P288

Fln msg: Distance to subject end: 162 aas, your sequence is shorter than subject: 112 - 429

Fln protein: CTFESAEDAGRAYDDAALKFRGSKAKLNFPERINNLDGDLTGMNIPKQETPEIADFAIQVARATSSLSLPTNGVNLSAAPYGRRSLHVESVNGEAHSNRLHQVIPRHFIPAD

Protein Length: 113

Fln nts: AATGTACATTTGAGAGTGCAGAAGATGCTGGTAGAGCATACGATGATGCTGCTTTAAAGTTTCGAGGGTCAAAGGCGAAATTGAACTTCCCGGAAAGAATCAACAACCTGGACGGCGATCTTACCGGTATGAACATCCCAAAGCAAGAAACCCCAGAAATTGCCGACTTCGCTATTCAAGTTGCACGCGCAACATCCAGCCTATCTCTGCCGACCAATGGCGTTAATTTGTCGGCAGCGCCCTACGGCCGCCGTAGTCTACACGTGGAAAGCGTAAATGGAGAAGCTCATTCTAACAGACTACACCAAGTGATTCCGCGGCATTTCATCCCAGCTGATT

Fln Alignment:

G5KS2UX02JD3SC___TFESAEDAGRAYDDAALKFRGSKAKLNFPERINNLDGDLTGMNIPKQETPEIADFAIQVARATSSLSLPT
A9P288_______________TFDTAEDAARAYDDAALKFRGARAKLNFPERVHVRDEDHLGMNIIKEERAAITDFSIQVAPATYHPSPPT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain