SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62217

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene62217
AATGTTTTGAGAAATAATATGCCAAAGGATTTGAAAGTTTACTATCCTGCAAGGGATGATCCAGAATCTGTTGAAATTTGCTATTTTGATATGGAATGCCTAGCTCCTTTTTCGTATTTGTCTTCACCGATCATGAATTTCTACATTCGGTACCTTCAAAGCGCTGAATCAACAATAACGTCAAAACAATGCACTAACTATCATTTCTTCAATACGTACTTTTACAGTAAACTAGATGAAGCATTA

Ace file of the UniGene sp_v3.0_unigene62217

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sentrin/sumo-specific protease, putative n=1 Tax=Ricinus communis RepID=B9SH87_RICCO	-	-	5.0e-19	60%
FL-Next	sp=Ubiquitin-like-specific protease 1D; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%

Source	Gene names
Sma3	RCOM_0527830;

Source	GOs	Term	Type	e value	Identity
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G60220.1	OTS1, ULP1D UB-like protease 1D chr1:22208332-22211910 FORWARD LENGTH=584	3.0e-20	50%
RefSeq	Arabidopsis thaliana	NP_176228.3	ubiquitin-like-specific protease 1D [Arabidopsis thaliana]	4.0e-20	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2PS26

Fln msg: Distance to subject end: 184 aas, your sequence is shorter than subject: 82 - 584

Fln protein: NVLRNNMPKDLKVYYPARDDPESVEICYFDMECLAPFSYLSSPIMNFYIRYLQSAESTITSKQCTNYHFFNTYFYSKLDEAL

Protein Length: 83

Fln nts: AATGTTTTGAGAAATAATATGCCAAAGGATTTGAAAGTTTACTATCCTGCAAGGGATGATCCAGAATCTGTTGAAATTTGCTATTTTGATATGGAATGCCTAGCTCCTTTTTCGTATTTGTCTTCACCGATCATGAATTTCTACATTCGGTACCTTCAAAGCGCTGAATCAACAATAACGTCAAAACAATGCACTAACTATCATTTCTTCAATACGTACTTTTACAGTAAACTAGATGAAGCATTA

Fln Alignment:

G5KS2UX02J2VJM___MPKDLK--VYYPARDDPESVEICYFDMECLAPFSYLSSPIMNFYIRYLQSAESTITSKQCTNYHFFNTYFYSKLDEAL
Q2PS26_______________LPEGLQEDICYPTRDDPHFVQVCLKDLECLAPREYLTSPVMNFYMRFLQQQISS-SNQISADCHFFNTYFYKKLSDAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain