SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62155

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene62155
AATGTAGACTTGTTGCATTACGTGTTTTATGATTGCCTTGGTTGGGAAGTTGGCAATGAAGGACAAGTTCTATTTGCAGATCCTCTTCTAACTCCAAAGGCCATAAGAGAGCTGCTGGTTCAACTTATGTTTGAAACCTTTAATGTAACTGGATTTTATGCATCTGAACAAGCAGTACTGTCACTTTATGCTGCTGGGAGGCTATCTGGTTGCGCTGTTGATGTTGGGCATGGAAAGAT

Ace file of the UniGene sp_v3.0_unigene62155

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin-related protein 7 n=2 Tax=Arabidopsis RepID=ARP7_ARATH	-	-	2.0e-29	80%
FL-Next	tr=Actin; Picea rubens (Red spruce) (Picea australis).	-	-	0.0	49%
Sma3	Actin-related protein ARP7	-	-	1.318e-09	-

Source	Gene names
Sma3	ARP1503; ARP1510; ARP7; ARP902; ARP903; At3g60830; CHLREDRAFT_103067; GSVIVT00010436001; GSVIVT00028776001; OsI_13767; OsJ_12834; PHYPADRAFT_112296; PHYPADRAFT_60323; POPTRDRAFT_706403; POPTRDRAFT_833195; RCOM_0968110; T4C21.240;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	anatomical structure morphogenesis	GO:0009653	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60830.1	ATARP7, ARP7 actin-related protein 7 chr3:22474298-22476000 FORWARD LENGTH=363	8.0e-38	80%
RefSeq	Arabidopsis thaliana	NP_567105.1	actin-related protein 7 [Arabidopsis thaliana]	1.0e-37	80%
RefSeq	Populus trichocarpa	XP_002314038.1	actin related protein [Populus trichocarpa]	5.0e-40	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9SPI7

Fln msg: Distance to subject end: 215 aas, your sequence is shorter than subject: 79 - 377

Fln protein: NVDLLHYVFYDCLGWEVGNEGQVLFADPLLTPKAIRELLVQLMFETFNVTGFYASEQAVLSLYAAGRLSGCAVDVGHGK

Protein Length: 80

Fln nts: AATGTAGACTTGTTGCATTACGTGTTTTATGATTGCCTTGGTTGGGAAGTTGGCAATGAAGGACAAGTTCTATTTGCAGATCCTCTTCTAACTCCAAAGGCCATAAGAGAGCTGCTGGTTCAACTTATGTTTGAAACCTTTAATGTAACTGGATTTTATGCATCTGAACAAGCAGTACTGTCACTTTATGCTGCTGGGAGGCTATCTGGTTGCGCTGTTGATGTTGGGCATGGAAAGAT

Fln Alignment:

G5KS2UX02HMM3T___HYVFYDCLGWEVGNEGQVLFADPLLTPKAIRELLVQLMFETFNVTGFYASEQAVLSLYAAGRLSGCAVDVGHG
Q9SPI7_______________HHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain