SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62083

Length: 143 nt

UniGene Fasta

>sp_v3.0_unigene62083
AATGTGATTCTTAAGCGACAACAAAGACTTACTGAGGAGTTTGTTCCTCGGGCAGACTTAGTGCTTTTTGTCATATCAGCCGACAGACCATTGACTGAAAGTGAGGTGACCTTTCTTCGTTACATACGCCAATGGGGTAAAAA

Ace file of the UniGene sp_v3.0_unigene62083

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitofusin 1 GTPase, involved in mitochondrila biogenesis (ISS) [Ostreococcus tauri] emb\|CAL55609.1\| Mitofusin 1 GTPase, involved in mitochondrila biogenesis (ISS) [Ostreococcus tauri]	-	-	1.0e-15	82%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	93%

Source	Gene names
Sma3	At1g03160; CHLREDRAFT_190184; F10O3.1; FZL; GSVIVT00023669001; MICPUCDRAFT_51027; MICPUN_62927; OJ1562_H01.8; OSTLU_44250; Os05g0390100; OsI_19825; OsJ_18414; Ot11g00040; PHYPADRAFT_149030; PHYPADRAFT_192506; POPTRDRAFT_205434; RCOM_0558170;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast membrane	GO:0031969	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	thiamine-phosphate diphosphorylase activity	GO:0004789	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	-
Sma3	thylakoid membrane organization	GO:0010027	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3		IPR002917	-	-
Sma3	Thiamine monophosphate synthase	IPR003733	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03160.1	FZL FZO-like chr1:761321-766053 FORWARD LENGTH=912	8.0e-20	82%
RefSeq	Arabidopsis thaliana	NP_001077452.1	FZO-like protein [Arabidopsis thaliana]	9.0e-20	82%
RefSeq	Populus trichocarpa	XP_002307580.1	predicted protein, partial [Populus trichocarpa]	1.0e-20	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9T7Z2

Fln msg: Distance to subject end: 435 aas, your sequence is shorter than subject: 47 - 823

Fln protein: NVILKRQQRLTEEFVPRADLVLFVISADRPLTESEVTFLRYIRQWGK

Protein Length: 48

Fln nts: AATGTGATTCTTAAGCGACAACAAAGACTTACTGAGGAGTTTGTTCCTCGGGCAGACTTAGTGCTTTTTGTCATATCAGCCGACAGACCATTGACTGAAAGTGAGGTGACCTTTCTTCGTTACATACGCCAATGGGGTAAAAA

Fln Alignment:

G5KS2UX02IH3KS___NVILKRQQRLTEEFVPRADLVLFVISADRPLTESEVTFLRYIRQWGK
A9T7Z2_______________NVILQRQQRLTEEFVPRADLVLFVLSADRALTESEVTFLRYIRQWGK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain