SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62054

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene62054
AATGTACCTTTCTTGTTCAACCTATTTGCAGACCCGGATATTATTCGTCTACCTAGATTATTTCGTTTTCTTCAAAAGCCTTTGGCACAATTCATTTCTGTGCTCAGGGCTCCTAAGAGCAGGGAAGGATATGCTGCAATTGGTGGTGGTTCACCTCTCCGAAGGATAACAGATGAACAGGCTGACTCATTAAGGAAGGCTCTTC

Ace file of the UniGene sp_v3.0_unigene62054

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ferrochelatase-2, chloroplastic n=7 Tax=Poaceae RepID=HEMH2_ORYSJ	-	-	1.0e-26	89%
FL-Next	sp=Ferrochelatase-2, chloroplastic; Oryza sativa subsp. indica (Rice).	-	-	0.0	89%
Sma3	Ferrochelatase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ferrochelatase.	EC:4.99.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT5G26030; At2g30390; At5g26030; CHLREDRAFT_183446; FeCh; GSVIVT00019218001; GSVIVT00032163001; HEM15; HEMH; LOC_Os05g29760; LOC_Os09g12560; MICPUCDRAFT_51216; MICPUN_96687; OSTLU_2831; Os05g0361200; Os09g0297000; OsI_018948; OsI_19638; OsJ_18231; OsJ_287

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ferrochelatase activity	GO:0004325	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	heme biosynthetic process	GO:0006783	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ferrochelatase	IPR001015	-	0.0	-
Sma3	Ferrochelatase, active site	IPR019772	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G30390.2	FC2 ferrochelatase 2 chr2:12951242-12953985 REVERSE LENGTH=522	3.0e-31	83%
RefSeq	Arabidopsis thaliana	NP_180598.1	ferrochelatase 2 [Arabidopsis thaliana]	4.0e-31	83%
RefSeq	Populus trichocarpa	XP_002309511.1	predicted protein [Populus trichocarpa]	8.0e-33	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A2Y3Q5

Fln msg: Distance to subject end: 329 aas, your sequence is shorter than subject: 68 - 526

Fln protein: NVPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVLRAPKSREGYAAIGGGSPLRRITDEQADSLRKAL

Protein Length: 69

Fln nts: AATGTACCTTTCTTGTTCAACCTATTTGCAGACCCGGATATTATTCGTCTACCTAGATTATTTCGTTTTCTTCAAAAGCCTTTGGCACAATTCATTTCTGTGCTCAGGGCTCCTAAGAGCAGGGAAGGATATGCTGCAATTGGTGGTGGTTCACCTCTCCGAAGGATAACAGATGAACAGGCTGACTCATTAAGGAAGGCTCTTC

Fln Alignment:

G5KS2UX02GE5YR___PFLFNLFADPDIIRLPRLFRFLQKPLAQFISVLRAPKSREGYAAIGGGSPLRRITDEQADSLRKAL
A2Y3Q5_______________PFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRQITDAQAEALRKAL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain