SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62046

Length: 246 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene62046
AAACGCAATCATCAGNACCCCTTATAGGCATCCAAAGCCCTATAAGGATGAGATAGAGCGCACCATTCAGGAGTTGTTAAGATTGGAACACATCAGGCCTAGCTCAAGCCCATTTGCTTCTTTTGCGGTGCTAGTGAAGAAAAAAGATGGGACATTGCGCTTGTGTATCGACTATCAGGCTCTAATTAAGAATACCTTGAAGAACAAATACCCCATTCCACACATAGATGAGTTGATGGACACATT

Ace file of the UniGene sp_v3.0_unigene62046 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FW76_ORYSJ	-	-	2.0e-18	63%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	66%
Sma3	Retrotransposon protein, putative, unclassified	-	-	4.938e-09	-

Source	Gene names
Sma3	At2g07660; H0124B04.16; H0321H01.8; H0502G05.6; LOC_Os03g05340; LOC_Os03g07050; LOC_Os03g10000; LOC_Os10g42880; LOC_Os11g32060; LOC_Os11g35200; LOC_Os11g38750; LOC_Os12g04880; LOC_Os12g18080; MtrDRAFT_AC155896g19v2; MtrDRAFT_AC155896g21v2; OJ1187_E11.7; O

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	triglyceride lipase activity	GO:0004806	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0008415	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Protein of unknown function DUF594	IPR007658	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: Distance to subject end: 106 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 81 - 142

Fln protein: NAIISTPYRHPKPYKDEIERTIQELLRLEHIRPSSSPFASFAVLVKKKDGTLRLCIDYQALIKNTLKNKYPIPHIDELMDT

Protein Length: 82

Fln nts: AAACGCAATCATCAGtACCCCTTATAGGCATCCAAAGCCCTATAAGGATGAGATAGAGCGCACCATTCAGGAGTTGTTAAGATTGGAACACATCAGGCCTAGCTCAAGCCCATTTGCTTCTTTTGCGGTGCTAGTGAAGAAAAAAGATGGGACATTGCGCTTGTGTATCGACTATCAGGCTCTAATTAAGAATACCTTGAAGAACAAATACCCCATTCCACACATAGATGAGTTGATGGACACATT

Fln Alignment:

G5KS2UX02GXFV6___TLRLCIDYQALIKNTLKNKYPIPHIDELMD
P31843_______________SLRMCIDYRALTKVTIKNKYPIPRVDDLFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain