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UniGene Name: sp_v3.0_unigene62035
Length: 175 nt
 UniGene Fasta
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| >sp_v3.0_unigene62035
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Ace file of the UniGene sp_v3.0_unigene62035
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | Vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine n=2 Tax=Populus trichocarpa RepID=B9I615_POPTR | - | - | 6.0e-18 | 90% |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 97% |
| Sma3 | 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | - | - | 8.913e-19 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. | EC:2.1.1.14 | - | 6.318e-32 | - |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Cysteine and methionine metabolism | 00270 | 6.318e-32 | % | |
| Sma3 | Selenocompound metabolism | 00450 | 6.318e-32 | % | |
| Sma3 | Biosynthesis of plant hormones | 01070 | 6.318e-32 | % | |
| Sma3 | Metabolic pathways | 01100 | 6.318e-32 | % | |
| Sma3 | Biosynthesis of secondary metabolites | 01110 | 6.318e-32 | % |
| Source | Gene names |
|---|---|
| Sma3 | At3g03780; At5g17920; At5g20980; BvMS1; CIMS; GSVIVT00003836001; GSVIVT00004893001; GSVIVT00017439001; GSVIVT00031893001; HvMS; LOC_Os12g42884; MET; METE; MPI7.9; MS1; MS2; MS3; MS4; Os12g0623900; Os12g0624000; OsI_39179; OsI_39180; OsJ_36927; PHYPADRAFT_ |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
| Sma3 | peroxisome | GO:0005777 | Cellular Component | 0.0 | - |
| Sma3 | cytosol | GO:0005829 | Cellular Component | 0.0 | - |
| Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast stroma | GO:0009570 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
| Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
| Sma3 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | GO:0003871 | Molecular Function | 0.0 | - |
| Sma3 | copper ion binding | GO:0005507 | Molecular Function | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
| Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
| Sma3 | methionine synthase activity | GO:0008705 | Molecular Function | 0.0 | - |
| Sma3 | methionine biosynthetic process | GO:0009086 | Biological Process | 0.0 | - |
| Sma3 | response to salt stress | GO:0009651 | Biological Process | 0.0 | - |
| Sma3 | cellular protein metabolic process | GO:0044267 | Biological Process | 0.0 | - |
| Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Chaperonin Cpn60/TCP-1 | IPR002423 | - | 0.0 | - |
| Sma3 | Methionine synthase, vitamin-B12 independent | IPR002629 | - | 0.0 | - |
| Sma3 | Cobalamin-independent methionine synthase | IPR006276 | - | 0.0 | - |
| Sma3 | Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal | IPR013215 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT3G03780.1 | ATMS2, MS2 methionine synthase 2 chr3:957602-960740 FORWARD LENGTH=765 | 8.0e-21 | 90% |
| RefSeq | Arabidopsis thaliana | NP_187028.1 | methionine synthase 2 [Arabidopsis thaliana] | 1.0e-20 | 90% |
| RefSeq | Populus trichocarpa | XP_002319710.1 | vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] | 3.0e-20 | 90% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LPY2
Fln msg: Separated hits, possible frame ERROR between 126 and 135, Distance to subject end: 102 aas, your sequence is shorter than subject: 58 - 766
Fln protein:
N
Protein Length:
59
Fln nts:
A
Fln Alignment:
G5KS2UX02F1NAR___LREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMxxxYSNFNDIIHSIID
B8LPY2_______________LREGLPLRKAEHAYYLDWAVHGFRITNSGVQDTTQIHTHMxxxYSNFNDIIHSIID
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
