SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62030

Length: 212 nt

UniGene Fasta

>sp_v3.0_unigene62030
AATGTACCCCTTGCTGCGCCATGAGCTCCCAAGATACAAAGTTGAACGGGTTATTTGTTCTCTCTGTGACACTGAGCAAAATGTCAAGCAAGTTTGCGAAAACTTAAAATGGGGGATTATTTCTGTTCAACGTGCAAGTTCTTTGATGATGATATCTCAAAGCAACAATATCATTGTGATGATTGTGGCATATGCAGGGTAGGAGGCCGGGA

Ace file of the UniGene sp_v3.0_unigene62030

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ring finger and CHY zinc finger domain-containing protein 1 [Arabidopsis thaliana] dbj\|BAB10613.1\| PGPD14 protein [Arabidopsis thaliana] gb\|AAK96553.1\| AT5g22920/MRN17_15 [Arabidopsis thaliana] gb\|AAO11551.1\| At5g22920/MRN17_15 [Arabidopsis thaliana] gb\|A	-	-	3.0e-20	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	RING finger and CHY zinc finger domain-containing protein 1	-	-	4.793e-11	-

Source	Gene names
Sma3	At3g62970; At5g18650; At5g22920; At5g25560; GSVIVT00000606001; GSVIVT00019811001; GSVIVT00022148001; GSVIVT00023586001; LOC_Os10g31850; Os01g0719100; Os10g0456800; OsI_03534; OsI_33881; OsJ_03270; OsJ_31771; P0480C01.28-1; PGPD14; PHYPADRAFT_124710; PHYPA

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein chr5:7665143-7667031 FORWARD LENGTH=291	2.0e-22	81%
RefSeq	Arabidopsis thaliana	NP_197683.1	ring finger and CHY zinc finger domain-containing protein 1 [Arabidopsis thaliana]	3.0e-22	81%
RefSeq	Populus trichocarpa	XP_002314304.1	predicted protein [Populus trichocarpa]	7.0e-23	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 143 aas, your sequence is shorter than subject: 70 - 273

Fln protein: MYPLLRHELPRYKVERVICSLCDTEQNVKQVCExxKMGDYFCSTCKFFDDDISKQQYHCDDCGICRVGGR

Protein Length: 71

Fln nts: AATGTACCCCTTGCTGCGCCATGAGCTCCCAAGATACAAAGTTGAACGGGTTATTTGTTCTCTCTGTGACACTGAGCAAAATGTCAAGCAAGTTTGCGAAxxxxxxAAAATGGGGGATTATTTCTGTTCAACGTGCAAGTTCTTTGATGATGATATCTCAAAGCAACAATATCATTGTGATGATTGTGGCATATGCAGGGTAGGAGGCCGGGA

Fln Alignment:

G5KS2UX02G3HPY___PLLRHELPRYKVERVICSLCDTEQNVKQVCENxxLKMGDYFCSTCKFFDDDISKQQYHCDDCGICRVGGR
D5A9X0_______________PKQRHELPRYKVERVICSLCDTEQNVNQVCENxxVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain