SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene62019

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene62019
AATGTCCAGTTTGACGTCTATTCTTACTGTGCGAAAATTGAACCCTACTGTTAAAGATGTTGAATCTCTCAAGGCCAGTGGAGACGCAGTAGGGTATCCGATCGGTTCTTTTGTAGCTCAATACCTCCAGCTGGAGCTTGGCATAACAAATCTCAAGACATATTCAACACCAGAGGAAGCTGGGTTAGCTCTCTCAAAAGGTCCAATGAATGGAGGCGTTGCTGCCATTTTCGACGAGA

Ace file of the UniGene sp_v3.0_unigene62019

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutamate receptor (Fragment) n=2 Tax=Vitis vinifera RepID=D7UDC6_VITVI	-	-	4.0e-12	51%
FL-Next	sp=Glutamate receptor 3.3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Sma3	Glutamate-gated kainate-type ion channel receptor subunit GluR5	-	-	7.946e-08	-

Source	Gene names
Sma3	POPTRDRAFT_578647; POPTRDRAFT_763640;

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G42540.1	ATGLR3.3, GLR3.3 glutamate receptor 3.3 chr1:15973489-15976703 FORWARD LENGTH=933	3.0e-16	50%
RefSeq	Arabidopsis thaliana	NP_174978.1	glutamate receptor 3.3 [Arabidopsis thaliana]	4.0e-16	50%
RefSeq	Populus trichocarpa	XP_002308726.1	glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa]	2.0e-16	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C8E7

Fln msg: Distance to subject end: 187 aas, your sequence is shorter than subject: 79 - 933

Fln protein: MSSLTSILTVRKLNPTVKDVESLKASGDAVGYPIGSFVAQYLQLELGITNLKTYSTPEEAGLALSKGPMNGGVAAIFDE

Protein Length: 80

Fln nts: AATGTCCAGTTTGACGTCTATTCTTACTGTGCGAAAATTGAACCCTACTGTTAAAGATGTTGAATCTCTCAAGGCCAGTGGAGACGCAGTAGGGTATCCGATCGGTTCTTTTGTAGCTCAATACCTCCAGCTGGAGCTTGGCATAACAAATCTCAAGACATATTCAACACCAGAGGAAGCTGGGTTAGCTCTCTCAAAAGGTCCAATGAATGGAGGCGTTGCTGCCATTTTCGACGAGA

Fln Alignment:

G5KS2UX02IT7VL___SSLTSILTVRKLNPTVKDVESLKASGDAVGYPIGSFVAQYLQLELGI--TNLKTYSTPEEAGLALSKGPMNGGVAAIFDE
Q9C8E7_______________ASLTSILTVQQLSSPIKGIESLRERDDPIGYQVGSFAESYLRNELNISESRLVPLGTPEAYAKALKDGPSKGGVAAIVDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain