UniGene Name: sp_v3.0_unigene61996
Length: 223 nt
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>sp_v3.0_unigene61996
A |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | Glycoside hydrolase, family 28 [Medicago truncatula] | - | - | 2.0e-09 | 63% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 76% |
Sma3 | Polygalacturonase | - | - | 9.59e-37 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Polygalacturonase. | EC:3.2.1.15 | - | 8.218e-29 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Pentose and glucuronate interconversions | 00040 | 8.218e-29 | % | |
Sma3 | Starch and sucrose metabolism | 00500 | 8.218e-29 | % | |
Sma3 | Metabolic pathways | 01100 | 8.218e-29 | % | |
Sma3 | Galacturan 1,4-alpha-galacturonidase. | EC:3.2.1.67 | - | 1.06e-11 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Pentose and glucuronate interconversions | 00040 | 1.06e-11 | % | |
Sma3 | Starch and sucrose metabolism | 00500 | 1.06e-11 | % | |
Sma3 | Metabolic pathways | 01100 | 1.06e-11 | % |
Source | Gene names |
---|---|
Sma3 | ADPG1; ADPG2; At1g70500; At2g41850; At3g07970; At3g57510; Cry j 2.1; Cry j 2.2; Cry j 2.3; Cryj2; F17A17.31; F24J13.7; F5O8.2; GSVIVT00002738001; GSVIVT00025514001; GSVIVT00025516001; GSVIVT00025518001; GSVIVT00025519001; GSVIVT00025571001; GSVIVT00028778 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | extracellular region | GO:0005576 | Cellular Component | 0.0 | - |
Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | amyloplast | GO:0009501 | Cellular Component | 0.0 | - |
Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
Sma3 | polygalacturonase activity | GO:0004650 | Molecular Function | 0.0 | - |
Sma3 | protein serine/threonine kinase activity | GO:0004674 | Molecular Function | 0.0 | - |
Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | carbohydrate metabolic process | GO:0005975 | Biological Process | 0.0 | - |
Sma3 | protein phosphorylation | GO:0006468 | Biological Process | 0.0 | - |
Sma3 | cellular cell wall organization | GO:0007047 | Biological Process | 0.0 | - |
Sma3 | cell wall modification involved in abscission | GO:0009830 | Biological Process | 0.0 | - |
Sma3 | fruit ripening | GO:0009835 | Biological Process | 0.0 | - |
Sma3 | anther dehiscence | GO:0009901 | Biological Process | 0.0 | - |
Sma3 | fruit dehiscence | GO:0010047 | Biological Process | 0.0 | - |
Sma3 | floral organ abscission | GO:0010227 | Biological Process | 0.0 | - |
Sma3 | pectin catabolic process | GO:0045490 | Biological Process | 0.0 | - |
Sma3 | pollen sperm cell differentiation | GO:0048235 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Regulator of chromosome condensation, RCC1 | IPR000408 | - | 0.0 | - |
Sma3 | Protein kinase, catalytic domain | IPR000719 | - | 0.0 | - |
Sma3 | Glycoside hydrolase, family 28 | IPR000743 | - | 0.0 | - |
Sma3 | Pentatricopeptide repeat | IPR002885 | - | 0.0 | - |
Sma3 | Parallel beta-helix repeat | IPR006626 | - | 0.0 | - |
Sma3 | Serine/threonine-protein kinase, active site | IPR008271 | - | 0.0 | - |
Sma3 | Tetratricopeptide-like helical | IPR011990 | - | 0.0 | - |
Sma3 | Pectin lyase fold | IPR012334 | - | 0.0 | - |
Sma3 | IPR017442 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT1G70500.1 | Pectin lyase-like superfamily protein chr1:26566579-26568729 REVERSE LENGTH=468 | 1.0e-11 | 55% |
RefSeq | Arabidopsis thaliana | NP_177207.1 | pectin lyase-like protein [Arabidopsis thaliana] | 2.0e-11 | 55% |
RefSeq | Populus trichocarpa | XP_002299601.1 | predicted protein [Populus trichocarpa] | 4.0e-13 | 69% |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LQX9
Fln msg: Distance to subject end: 127 aas, your sequence is shorter than subject: 74 - 493
Fln protein:
N
Protein Length:
75
Fln nts:
A
Fln Alignment:
G5KS2UX02GSBI3___ICTENITCXXXXXXXXXXXXXXXXAKAQVADVMVHGAFLENTTNGLRIKTWQGSSGFARRITFQNVQMQNVK
B8LQX9_______________IYIENITCGPGHGISIGSLGEGS-AKARVADVMVHGAFLHNTTNGLRIKTWQGSSGSARRILFQNVHMENVK
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain