SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61960

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene61960
GATCAAAAGTTGTAAGTCATCTCCAAGTTGCCTATTCCAAATTGTCAAAAAGATGTTAGAAGTTTTCTGGGATTTGCTGGGTACAATAGAAGATTTATAGAGAACTTCACTAAAATAGCATCTCCACTCTTCAAATTGCTTACAAAAGACTGTGAATTCAAATGGGATCCTGATTGTCAATCAGCATTTG

Ace file of the UniGene sp_v3.0_unigene61960

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF	-	-	8.0e-12	59%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	43%

Source	Gene names
Sma3	19.t00014; 19.t00017; VITISV_007652; VITISV_009673; VITISV_020846;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92523

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 49 aas, your sequence is shorter than subject: 63 - 158

Fln protein: DQKL*VISKLPIPNCQKDVRSFLGFAGYNRRFIENFTKIASPLFKLLTKDCEFKWDPDCQSAF

Protein Length: 64

Fln nts: GATCAAAAGTTGTAAGTCATCTCCAAGTTGCCTATTCCAAATTGTCAAAAAGATGTTAGAAGTTTTCTGGGATTTGCTGGGTACAATAGAAGATTTATAGAGAACTTCACTAAAATAGCATCTCCACTCTTCAAATTGCTTACAAAAGACTGTGAATTCAAATGGGATCCTGATTGTCAATCAGCATTTG

Fln Alignment:

G5KS2UX02GU84J___PIPNCQKDVRSFLGFAGYNRRFIENFTKIASPLFKLLTKDCEFKWDPDCQSAF
P92523_______________PEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain