SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61946

Length: 100 nt

UniGene Fasta

>sp_v3.0_unigene61946
AATGTCTACGTCGTGCAGCGCAGGTCCTGTTTTTGCCGAAGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCGGGAGGT

Ace file of the UniGene sp_v3.0_unigene61946

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Ricinus communis RepID=B9SRR5_RICCO	-	-	8.0e-09	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Ubiquitin carrier protein	-	-	3.958e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ligases, Forming carbon-nitrogen bonds, Acid--D-amino-acid ligases (peptide synthases).	EC:6.3.2.-	-	1.407e-22	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Tryptophan metabolism	00380		1.407e-22	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053		1.407e-22	%
Sma3	Ubiquitin--protein ligase.	EC:6.3.2.19	-	2.191e-12	-

Source	Gene names
Sma3	AT5G41700; AT5G53300; At1g64230; At2g16740; At3g08690; At3g08700; At4g27960; At5g41700; At5g53300; B0811B10.8; B1043F11.37; CHLREDRAFT_152525; Elr; F17O14.16; F17O14.17; F22C12.2; GSVIVT00002469001; GSVIVT00006484001; GSVIVT00023383001; GSVIVT00023926001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G27960.2	UBC9 ubiquitin conjugating enzyme 9 chr4:13916065-13917293 REVERSE LENGTH=178	5.0e-14	90%
RefSeq	Arabidopsis thaliana	NP_001154776.1	ubiquitin-conjugating enzyme E2 10 [Arabidopsis thaliana]	5.0e-14	90%
RefSeq	Populus trichocarpa	XP_002325633.1	predicted protein [Populus trichocarpa]	2.0e-14	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKT3

Fln msg: Distance to subject end: 100 aas, your sequence is shorter than subject: 33 - 148

Fln protein: MSTSCSAGPVFAEDMFHWQATIMGPGDSPYAGG

Protein Length: 34

Fln nts: AATGTCTACGTCGTGCAGCGCAGGTCCTGTTTTTGCCGAAGATATGTTTCATTGGCAAGCGACAATTATGGGTCCTGGTGATAGTCCGTACGCGGGAGGT

Fln Alignment:

G5KS2UX02HLTHI___TSCSAGPVFAEDMFHWQATIMGPGDSPYAGG
A9NKT3_______________TSCSAGPV-AEDMFHWQATIMGPSDSPYAGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain