SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61905

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene61905
AATGTGTGTCTGAGGAACAGAGAGAAAATGCCCTACGTTTACCTACAGTGAGAAGTTGGCAATTGCTTTTGGTCTTATCAGCACAATACCTGAGATGCCTCTTAGAATTATGAAGAATCTCCGAGTATGTGGAGATTGCCACACTGCTACCAAGTTAATCTCTAAAATAGTTGAGCGAGAAATCATTGTGAGGGATGCCAATCGTTTCCATCATTTCAAAATGGACTGTGCTCTTGT

Ace file of the UniGene sp_v3.0_unigene61905

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Pentatricopeptide repeat protein	-	-	-

Source	Gene names
Sma3	At1g56690; At2g22070; At2g27610; At3g03580; At3g12770; At3g24000; At3g26782; At3g49170; At4g14050; At4g30700; At4g33170; At4g33990; At4g37380; At5g06540; DYW9; EMB2261; EMB2758; F10A12.28; F14O13.19; F15K20.29; F15M7.7; F17I5.180; F25P12.87; F2K15.30; F4I

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G30700.1	Pentatricopeptide repeat (PPR) superfamily protein chr4:14962617-14964995 REVERSE LENGTH=792	3.0e-24	70%
RefSeq	Arabidopsis thaliana	NP_194799.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-24	70%
RefSeq	Populus trichocarpa	XP_002300569.1	predicted protein, partial [Populus trichocarpa]	1.0e-24	74%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 78 - 246

Fln protein: MCV*GTERKCPTFTYSEKLAIAFGLISTIPEMPLRIMKNLRVCGDCHTATKLISKIVEREIIVRDANRFHHFKMDCAL

Protein Length: 79

Fln nts: AATGTGTGTCTGAGGAACAGAGAGAAAATGCCCTACGTTTACCTACAGTGAGAAGTTGGCAATTGCTTTTGGTCTTATCAGCACAATACCTGAGATGCCTCTTAGAATTATGAAGAATCTCCGAGTATGTGGAGATTGCCACACTGCTACCAAGTTAATCTCTAAAATAGTTGAGCGAGAAATCATTGTGAGGGATGCCAATCGTTTCCATCATTTCAAAATGGACTGTGCTCTTGT

Fln Alignment:

G5KS2UX02J0H9U___FTYSEKLAIAFGLISTIPEMPLRIMKNLRVCGDCHTATKLISKIVEREIIVRDANRFHHFK
D5AAE0_______________YHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain