SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61866

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene61866
AATGTATATTTTTCACGCACCTTACATAAAAGCCTGATTGGCAGGAGGAGCACCATCGACATTAGTGAGTTTAATCGGTGGAAAGCAGTACCGTCGTTGTGCAAATGACATATATTTCTTTCTTCAATCTAGTGTCTGTGTGAAGCAGCTTGCTTACAGCCTTTTGGAATTGCTGCTTATTACTACCTTCCCTGAGCTGCAGGAAGTTGTCCTTGATATACATCGTAACGCACATGGCT

Ace file of the UniGene sp_v3.0_unigene61866

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	65%

Source	Gene names
Sma3	GSVIVT00036497001; LOC_Os11g06040; OSJNBb0035N21.8; Os05g0583500; OsI_21157; OsI_35199; OsJ_19696; OsJ_33047; PHYPADRAFT_113447; PHYPADRAFT_127974; PHYPADRAFT_74637; PHYPADRAFT_77750; RCOM_0939510; VITISV_027626;

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	phosphatidylinositol binding	GO:0035091	Molecular Function	-
Sma3	cell communication	GO:0007154	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phox homologous domain	IPR001683	-	-
Sma3	Phox-associated domain	IPR003114	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Sorting nexin, C-terminal	IPR013937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G15900.1	" Phox-associated domain;Phox-like;Sorting nexin, C-terminal chr2:6927390-6932535 FORWARD LENGTH=994"	3.0e-21	55%
RefSeq	Arabidopsis thaliana	NP_179190.3	phox domain-containing protein [Arabidopsis thaliana]	4.0e-21	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: I1ND24

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 79 - 982

Fln protein: MYIFHAPYIKA*LAGGAPSTLVSLIGGKQYRRCANDIYFFLQSSVCVKQLAYSLLELLLITTFPELQEVVLDIHRNAHG

Protein Length: 80

Fln nts: AATGTATATTTTTCACGCACCTTACATAAAAGCCTGATTGGCAGGAGGAGCACCATCGACATTAGTGAGTTTAATCGGTGGAAAGCAGTACCGTCGTTGTGCAAATGACATATATTTCTTTCTTCAATCTAGTGTCTGTGTGAAGCAGCTTGCTTACAGCCTTTTGGAATTGCTGCTTATTACTACCTTCCCTGAGCTGCAGGAAGTTGTCCTTGATATACATCGTAACGCACATGGCT

Fln Alignment:

G5KS2UX02JZ1WT___APYIKA*LAGGAPSTLVSLIGGKQYRRCANDIYFFLQSSVCVKQLAYSLLELLLITTFPELQEVVLDIHRNAH
I1ND24_______________ASELKKLLFDGAPSALVSLIGQKQYKRCASDIYYFSQSSICVKQLAYAILELLLISIFPELRNVVISVHENMH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain