SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61816

Length: 349 nt

UniGene Fasta

>sp_v3.0_unigene61816
AATGTAGTAGTGCCCTTTTTGGTTAACCAATGCACCAACAACGTTCCAAGCCACTATGAACGAGTTATTCCGTCCATATCTTAGGAAGTTTGTATTAGTTTTCTTTGATAATATTTTAATTTACGATAAAACTTGGAAGGAGCACCTACAACATCTGGATAAATTTCTTACTCTATTGGAGGAGCATTAGTTCTACGCCAAGAAATCCAAATGCAACTTTGGGAAGGAAGAAGTAGAATATATCAGACACATAATATCCCATGAAGGAGTAAAAGTGGACCCTAATAAAATCAAGGCTATAAAGGAATGGACCAATTCTTCTTAGGATTGATTGGATATTACTGAAGAT

Ace file of the UniGene sp_v3.0_unigene61816

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH	-	-	2.0e-28	58%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	45%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	3.805e-29	-

Source	Gene names
Sma3	At2g05610; At2g10780; F23H6.1; H0201G08.12; H0502B11.9; H0616A11.2; H0823A09.5; LOC_Os03g05350; LOC_Os03g15450; LOC_Os03g29790; LOC_Os03g30350; LOC_Os03g32380; LOC_Os03g39330; LOC_Os03g42950; LOC_Os03g47840; LOC_Os03g49330; LOC_Os10g06110; LOC_Os10g08820;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	carbonate dehydratase activity	GO:0004089	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	carbon utilization	GO:0015976	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Carbonic anhydrase	IPR001765	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Carbonic anhydrase, prokaryotic-like, conserved site	IPR015892	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00860.1	ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158	3.0e-11	45%
RefSeq	Arabidopsis thaliana	NP_085542.1	hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana]	4.0e-11	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 88 aas, your sequence is shorter than subject: 90 - 158

Fln protein: MNELFRPYLRKFVLVFFDNILIYDKTWKEHLQHLDKFLTLLEEH*FYAKKSKCNFGKEEVEYIRHIISHEGVKVDPNKIKAIKEWTNSS*

Protein Length: 91

Fln nts: AATGTAGTAGTGCCCTTTTTGGTTAACCAATGCACCAACAACGTTCCAAGCCACT_-_ATGAACGAGTTATTCCGTCCATATCTTAGGAAGTTTGTATTAGTTTTCTTTGATAATATTTTAATTTACGATAAAACTTGGAAGGAGCACCTACAACATCTGGATAAATTTCTTACTCTATTGGAGGAGCATTAGTTCTACGCCAAGAAATCCAAATGCAACTTTGGGAAGGAAGAAGTAGAATATATCAGACACATAATATCCCATGAAGGAGTAAAAGTGGACCCTAATAAAATCAAGGCTATAAAGGAATGGACCAATTCTTCTTAGGATTGATTGGATATTACTGAAGAT

Fln Alignment:

G5KS2UX02IDHXW___LQHLDKFLTLLEEH*FYAKKSKCNFGKEEVEYI--RHIISHEGVKVDPNKIKAIKEW
P92523_______________MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain