SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61798

Length: 221 nt

UniGene Fasta

>sp_v3.0_unigene61798
AATGTCATGGTTCAACGCAGAGTACGCGGGGGGAGGCCAAATCCCCATGGGCTGCGAGAAGAGCCTCTCATTGGAGCAAATAGAGGAGCTAAAGGAGATCTTTGCGAGGTTCGATCTTGACTCAGACAGAAGCCTGACGCAATTAGAGCAGGGGTCTTTTGAGATCTCTGGGACTGAAGCGCAGCGGCGAACAGATAGATGCCCTAATCAAGGGCGTGGAT

Ace file of the UniGene sp_v3.0_unigene61798

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	6.0e-10	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	GOs	Term	Type	Identity
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRS1

Fln msg: Distance to subject end: 105 aas, your sequence is shorter than subject: 73 - 163

Fln protein: MSWFNAEYAGGGQIPMGCEKSLSLEQIEELKEIFARFDLDSDRSLTQLEQGSFEISGTEAQRRTDRCPNQGRG

Protein Length: 74

Fln nts: A_-_ATGTCATGGTTCAACGCAGAGTACGCGGGGGGAGGCCAAATCCCCATGGGCTGCGAGAAGAGCCTCTCATTGGAGCAAATAGAGGAGCTAAAGGAGATCTTTGCGAGGTTCGATCTTGACTCAGACAGAAGCCTGACGCAATTAGAGCAGGGGTCTTTTGAGATCTCTGGGACTGAAGCGCAGCGGCGAACAGATAGATGCCCTAATCAAGGGCGTGGAT

Fln Alignment:

G5KS2UX02JLLYY___MGCEKSLSLEQIEELKEIFARFDLDSDRSLTQLEQGSF
B8LRS1_______________MGCEKSLSEEQIEELKEIFSRFDLDSDGSLTQLELGGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain