SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61770

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene61770
AATGTAGTGTAACTACGCAGTTGGAGCAGGCTTTAAGTGAATTGGCTTATGAAGAACTTGGATTGTCAGATGAAGTTCGAGAACAGGTTGAACTTGTACATGCCCAGTTCAAAAGAGCTAAAGGAAGAGCTGACACACCTGATTTGGAAATCGAGAAAGATCTAAGTACCGTCTTGTCTCAGAGGAGTGATAGAGATGTTGACCAATCGGTATTAAGAAGATTAGCAG

Ace file of the UniGene sp_v3.0_unigene61770

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Spotted leaf protein, putative n=1 Tax=Ricinus communis RepID=B9T786_RICCO	-	-	1.0e-16	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Gene names
Sma3	At3g46510; F12A12.30; GSVIVT00024348001; OsI_037539; OsI_38799; OsJ_36575; POPTRDRAFT_723298; PUB13; RCOM_0367530; SPL11;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G46510.1	PUB13, ATPUB13 plant U-box 13 chr3:17124106-17126539 REVERSE LENGTH=660	6.0e-19	56%
RefSeq	Arabidopsis thaliana	NP_190235.1	U-box domain-containing protein 13 [Arabidopsis thaliana]	8.0e-19	56%
RefSeq	Populus trichocarpa	XP_002313440.1	predicted protein [Populus trichocarpa]	8.0e-19	56%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 453 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 75 - 497

Fln protein: CSVTTQLEQALSELAYEELGLSDEVREQVELVHAQFKRAKGRADTPDLEIEKDLSTVLSQRSDRDVDQSVLRRLA

Protein Length: 76

Fln nts: A_-_ATGTAGTGTAACTACGCAGTTGGAGCAGGCTTTAAGTGAATTGGCTTATGAAGAACTTGGATTGTCAGATGAAGTTCGAGAACAGGTTGAACTTGTACATGCCCAGTTCAAAAGAGCTAAAGGAAGAGCTGACACACCTGATTTGGAAATCGAGAAAGATCTAAGTACCGTCTTGTCTCAGAGGAGTGATAGAGATGTTGACCAATCGGTATTAAGAAGATTAGCAG

Fln Alignment:

G5KS2UX02HTJXT___VHAQFKRAKGRADTPDLEIEKDLSTVLSQRSDRDVDQSVLRRLA
C0PSB5_______________MHLQLKRSKGRADTQDIELFMDIMIALSQKDGRNADSAVLERLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain