SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61674

Length: 131 nt

UniGene Fasta

>sp_v3.0_unigene61674
AATGTCAAGAAATTATGGAAGATCTCCAGAGATTCTCGAGGGGAGAGAAATATTACAGGCAAGTGGGGCGGGCATGGAAGCGGGGTTATTTGCTCTACGGTCCCCCTGGAACTGGCAAGTCCAGTATGATT

Ace file of the UniGene sp_v3.0_unigene61674

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[O] COG0465 ATP-dependent Zn proteases	-	-	5.0e-06	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	ATP binding protein, putative	-	-	4.335e-18	-

Source	Gene names
Sma3	AT4g30250; At1g43910; At1g43910/F9C16_7; At3g28510; At3g28600; At3g50930; At4g25835; At4g30250; At5g57480; F18B3.210; F9N11.100; GSVIVT00003720001; GSVIVT00020820001; GSVIVT00020821001; GSVIVT00020823001; GSVIVT00020827001; GSVIVT00020828001; GSVIVT000208

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G57480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:23279406-23280968 REVERSE LENGTH=520	2.0e-16	71%
RefSeq	Arabidopsis thaliana	NP_200556.1	AAA-type ATPase family protein [Arabidopsis thaliana]	2.0e-16	71%
RefSeq	Populus trichocarpa	XP_002310860.1	predicted protein [Populus trichocarpa]	4.0e-17	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9D7

Fln msg: Distance to subject end: 223 aas, your sequence is shorter than subject: 43 - 478

Fln protein: CQEIMEDLQRFSRGEKYYRQVGRAWKRGYLLYGPPGTGKSSMI

Protein Length: 44

Fln nts: AATGTCAAGAAATTATGGAAGATCTCCAGAGATTCTCGAGGGGAGAGAAATATTACAGGCAAGTGGGGCGGGCATGGAAGCGGGGTTATTTGCTCTACGGTCCCCCTGGAACTGGCAAGTCCAGTATGATT

Fln Alignment:

G5KS2UX02GH5H9___QEIMEDLQRFSRGEKYYRQVGRAWKRGYLLYGPPGTGKSSMI
D5A9D7_______________QDIMEDLQRFLRGEKYYRQVGRAWKRGYLLYGPPGTGKSSMI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain