SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61669

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene61669
AATGTAAAAACATATGTCCTAATGCTGTCACATACAATGTGTTTATTAATGGTCTCTGTAAGGGAGGCATGTTGGACGAGGCTAATAAACTCTTCAATCAAATGCCCAACAAAAACGTAAGCCCTAATGTGGTCACATACAATGTCCTTATTGATGGTTTCTGTAAAGGAGGCAAGTTAGACAAGGCTATGAAACTCCTTTATGAAATGCGCA

Ace file of the UniGene sp_v3.0_unigene61669

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R7P1_RICCO	-	-	3.0e-14	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G06580.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:2014440-2015942 REVERSE LENGTH=500	6.0e-18	51%
RefSeq	Arabidopsis thaliana	NP_172145.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-18	51%
RefSeq	Populus trichocarpa	XP_002321748.1	predicted protein [Populus trichocarpa]	1.0e-18	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN20

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 70 - 420

Fln protein: CKNICPNAVTYNVFINGLCKGGMLDEANKLFNQMPNKNVSPNVVTYNVLIDGFCKGGKLDKAMKLLYEMR

Protein Length: 71

Fln nts: AATGTAAAAACATATGTCCTAATGCTGTCACATACAATGTGTTTATTAATGGTCTCTGTAAGGGAGGCATGTTGGACGAGGCTAATAAACTCTTCAATCAAATGCCCAACAAAAACGTAAGCCCTAATGTGGTCACATACAATGTCCTTATTGATGGTTTCTGTAAAGGAGGCAAGTTAGACAAGGCTATGAAACTCCTTTATGAAATGCGCA

Fln Alignment:

G5KS2UX02IIZ5P___KNICPNAVTYNVFINGLCKGGMLDEANKLFNQMPNKNVSPNVVTYNVLIDGFCKGGKLDKAMKLLYEM
B8LN20_______________KGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain