SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61668

Length: 259 nt

UniGene Fasta

>sp_v3.0_unigene61668
AATGTATGTATGCAAAATGTGACAATATTGAGAATGCACGCAAAATGTTTGACATAATGTGTGAACGAGATTTGGTTTCTTGGACTGTGCTAATATCTGGATATGCACGGCATGGACATTGCAACGAAGCTCTTGACCTTTTTGCTGAAATGGAACTCGCGAGTTTCAAGCCAAATGAGATCACTTATGCCAGCTATTTCAGTGCTTGTGCAGAGTGTGGGAACATGGAAAATGCATGCCATGTGTTTGACAGATTGCA

Ace file of the UniGene sp_v3.0_unigene61668

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPR multi-domain protein	-	-	1.0e-06	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G22070.1	pentatricopeptide (PPR) repeat-containing protein chr2:9383602-9385962 FORWARD LENGTH=786	5.0e-19	45%
RefSeq	Arabidopsis thaliana	NP_179798.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-19	45%
RefSeq	Populus trichocarpa	XP_002307076.1	predicted protein [Populus trichocarpa]	3.0e-22	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 85 - 394

Fln protein: CMYAKCDNIENARKMFDIMCERDLVSWTVLISGYARHGHCNEALDLFAEMELASFKPNEITYASYFSACAECGNMENACHVFDRL

Protein Length: 86

Fln nts: AATGTATGTATGCAAAATGTGACAATATTGAGAATGCACGCAAAATGTTTGACATAATGTGTGAACGAGATTTGGTTTCTTGGACTGTGCTAATATCTGGATATGCACGGCATGGACATTGCAACGAAGCTCTTGACCTTTTTGCTGAAATGGAACTCGCGAGTTTCAAGCCAAATGAGATCACTTATGCCAGCTATTTCAGTGCTTGTGCAGAGTGTGGGAACATGGAAAATGCATGCCATGTGTTTGACAGATTGCA

Fln Alignment:

G5KS2UX02IWZ9G___MYAKCDNIENARKMFDIMCERDLVSWTVLISGYARHGHCNEALDLFAEMELASFKPNEITYASYFSACAECGNME
B8LKN6_______________MFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain