SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61656

Length: 275 nt

UniGene Fasta

>sp_v3.0_unigene61656
AATGTCTTGAGACAGCTAAAAGCAGCTCGTCCATTGACAAAAGTTATGAGCTTCCTGATGGGCAGGTGATCACCATTGGTGCTGAAAAGGCACACCGATCCGGGCACCATCACTCTTCTCCTGCAAGACCAAGTTGGAGGCCTACAGGCTACCAAGGACGATGGCAAAAACTGGATTACTGTGGAGCCCATTCAAGGAGCCGTTGTTGTCAATTTGGGAGATCATATGCATTATCTGAGCAATGGCAAGTTCAAGACCGCGGACCATCAAGCGGT

Ace file of the UniGene sp_v3.0_unigene61656

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavanone 3-hydroxylase 2 (Fragment) n=3 Tax=Pseudotsuga menziesii var. menziesii RepID=Q5ME24_PSEMZ	-	-	8.0e-30	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Flavanone 3-hydroxylase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavanone 3-dioxygenase.	EC:1.14.11.9	-	3.355e-36	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	3.355e-36	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.355e-36	%
Sma3	Metabolic pathways	01100	3.355e-36	%
Sma3	Biosynthesis of secondary metabolites	01110	3.355e-36	%

Source	Gene names
Sma3	AN3; AT3G51240.1; CitF3H; CtF3H; EgF3H; F3H; F3H-1; F3H-2; F3H-A; F3H-A1; F3H-B1; F3H-D1; F3H-FL1; F3H1; F3H2; F3H4; F3H6; FHT; FrF3H1; GA20ox2; GSVIVT00014419001; GSVIVT00036782001; GtF3H-1; GtF3H-2; IhF3H1; IhF3H2; IhF3H3; LsF3H; MdF3H; NtF3H; OSJNBa008

Source	GOs	Term	Type	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	L-ascorbic acid binding	GO:0031418	Molecular Function	-
Sma3	naringenin 3-dioxygenase activity	GO:0045486	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	0.0	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51240.1	F3H, TT6, F3'H flavanone 3-hydroxylase chr3:19025409-19026658 FORWARD LENGTH=358	6.0e-33	81%
RefSeq	Arabidopsis thaliana	NP_001190050.1	Naringenin,2-oxoglutarate 3-dioxygenase [Arabidopsis thaliana]	2.0e-33	81%
RefSeq	Populus trichocarpa	XP_002334617.1	flavanone 3-hydroxylase, partial [Populus trichocarpa]	1.0e-33	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9Q0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 74 aas, your sequence is shorter than subject: 91 - 359

Fln protein: NVLRQLKAARPLTKVMSFLMGR*SPLVLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAVVVNLGDHMHYLSNGKFKTADHQA

Protein Length: 92

Fln nts: AATGTCTTGAGACAGCTAAAAGCAGCTCGTCCATTGACAAAAGTTATGAGCTTCCTGATGGGCAGGTGATCACCATTGGTGCTGAAAAGGCACACCGATCCGGGCACCATCACTCTTCTCCTGCAAGACCAAGTTGGAGGCCTACAGGCTACCAAGGACGATGGCAAAAACTGGATTACTGTGGAGCCCATTCAAGGAGCCGTTGTTGTCAATTTGGGAGATCATATGCATTATCTGAGCAATGGCAAGTTCAAGACCGCGGACCATCAAGCGGT

Fln Alignment:

G5KS2UX02HP6BW___LVLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAVVVNLGDHMHYLSNGKFKTADHQA
D5A9Q0_______________LGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain