SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61655

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene61655
AATGTGTTCTGCTTTAGTTCACATCGCCATTTTCTCCAAGGACCATGCCAAGTCTGTTTGGTGTTTGAATGAGCTAGTTTTAATGTTGAAATCTGATGCTACAATTCTTCCAGTGTTTTGGGATGTTGATCCTGCTGAATTTCGTTGGTGTAAAGGAGCTTGCGGTGATGCATTTCGCGAACATGAATCAAAGGGTAGATACAGCGAAGAGCAGATTAAAGATGG

Ace file of the UniGene sp_v3.0_unigene61655

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	1.0e-13	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-
Sma3	NB-ARC	IPR002182	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMX8

Fln msg: Distance to subject end: 510 aas, your sequence is shorter than subject: 74 - 653

Fln protein: MCSALVHIAIFSKDHAKSVWCLNELVLMLKSDATILPVFWDVDPAEFRWCKGACGDAFREHESKGRYSEEQIKD

Protein Length: 75

Fln nts: AATGTGTTCTGCTTTAGTTCACATCGCCATTTTCTCCAAGGACCATGCCAAGTCTGTTTGGTGTTTGAATGAGCTAGTTTTAATGTTGAAATCTGATGCTACAATTCTTCCAGTGTTTTGGGATGTTGATCCTGCTGAATTTCGTTGGTGTAAAGGAGCTTGCGGTGATGCATTTCGCGAACATGAATCAAAGGGTAGATACAGCGAAGAGCAGATTAAAGATGG

Fln Alignment:

G5KS2UX02IWN13___SALVHIAIFSKDHAKSVWCLNELVLMLKSDATILPVFWDVDPAEFRWCKGACGDAFREHESKGRYSEEQIK
B8LMX8_______________TASVHLAIFSPRYAESDWCLNELLLMLESNAPIIPVFYRVKPAEVRWMLGLYGEYLQSHETKGRYDPNTIK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain