SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61647

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene61647
AATGTATAAGATGTCTGAAAGAAATGTGGTCTCATGGAGTGCAATGATTGCGGGGTATGCTTATAATGGATATGCGAACGAGGCCTTGAAACTCTACAATCAGATGCAACTAGCAAAGGTGAAACCCAACTCAGTCACTACGGTGAGCTTGCTGTTGGCATGTACCCTTCTAGGAGCTCTGCAACAAGGTAAAGCAATCCATAATTACATAATTAGAAGTGGCTTTGACGTGGATGTGTCTGT

Ace file of the UniGene sp_v3.0_unigene61647

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RGS8_RICCO	-	-	0.0001	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%

Source	Gene names
Sma3	At3g46790; CRR2; GSVIVT00024231001; PCMP-H54; POPTRDRAFT_558016; RCOM_0732570; RCOM_1443630; T6H20.180;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: Distance to subject end: 143 aas, your sequence is shorter than subject: 80 - 394

Fln protein: MYKMSERNVVSWSAMIAGYAYNGYANEALKLYNQMQLAKVKPNSVTTVSLLLACTLLGALQQGKAIHNYIIRSGFDVDVS

Protein Length: 81

Fln nts: AATGTATAAGATGTCTGAAAGAAATGTGGTCTCATGGAGTGCAATGATTGCGGGGTATGCTTATAATGGATATGCGAACGAGGCCTTGAAACTCTACAATCAGATGCAACTAGCAAAGGTGAAACCCAACTCAGTCACTACGGTGAGCTTGCTGTTGGCATGTACCCTTCTAGGAGCTCTGCAACAAGGTAAAGCAATCCATAATTACATAATTAGAAGTGGCTTTGACGTGGATGTGTCTGT

Fln Alignment:

G5KS2UX02HEB6H___KMSERNVVSWSAMIXXXXXXXXXXEALKLYNQMQLAKVKPNXXXXXXXXXXXXXXXXXXXXKAIHNYIIRSGFDVDV
B8LKN6_______________KMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain