SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61611

Length: 272 nt

UniGene Fasta

>sp_v3.0_unigene61611
AATGTCAATTGATGACCAGGATAAAATAGGAGGCATTGATTTTTCAATAGAAGTCCTTGCAAAAGTTCTTTGTGGCCTTATATGCCAAATTACTCATGAAAAGGTTGTCCTTGTTGGATACTCAATGGGAGCAAGAATTGCACTGTACATGGCTTTGAAGTTCAATAAGCAGATTGCTGCTGCTGCACTTATATCTGGAAGTCCAGGACTGCAAGACCCTTACATGAGGATGACCAGGTCTGCCCAAGATGATGCTTTGGCAGAATCACTTC

Ace file of the UniGene sp_v3.0_unigene61611

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding protein [Arabidopsis thaliana] gb\|AEE34855.1\| 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding protein [Arabidopsis thaliana]	-	-	1.0e-16	58%
FL-Next	sp=Protein PHYLLO, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%

Source	Gene names
Sma3	At1g68900; POPTRDRAFT_225773; T6L1.8;

Source	GOs	Term	Type	Identity
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	2-oxoglutarate decarboxylase activity	GO:0008683	Molecular Function	-
Sma3	hydro-lyase activity	GO:0016836	Molecular Function	-
Sma3	thiamine pyrophosphate binding	GO:0030976	Molecular Function	-
Sma3	cellular amino acid catabolic process	GO:0009063	Biological Process	-
Sma3	menaquinone biosynthetic process	GO:0009234	Biological Process	-
Sma3	phylloquinone biosynthetic process	GO:0042372	Biological Process	-
Sma3	photosystem I stabilization	GO:0042550	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Menaquinone biosynthesis protein MenD	IPR004433	-	-
Sma3	O-succinylbenzoic acid (OSB) synthetase	IPR010196	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Mandelate racemase/muconate lactonizing enzyme, C-terminal	IPR013342	-	-
Sma3	Mandelate racemase/muconate lactonizing enzyme, conserved site	IPR018110	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68890.1	" magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases chr1:25896988-25906553 FORWARD LENGTH=1715"	5.0e-21	58%
RefSeq	Arabidopsis thaliana	NP_177055.2	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding protein [Arabidopsis thaliana]	7.0e-21	58%
RefSeq	Populus trichocarpa	XP_002314908.1	predicted protein, partial [Populus trichocarpa]	4.0e-18	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q15KI9

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 90 - 1715

Fln protein: MSIDDQDKIGGIDFSIEVLAKVLCGLICQITHEKVVLVGYSMGARIALYMALKFNKQIAAAALISGSPGLQDPYMRMTRSAQDDALAESL

Protein Length: 91

Fln nts: AATGTCAATTGATGACCAGGATAAAATAGGAGGCATTGATTTTTCAATAGAAGTCCTTGCAAAAGTTCTTTGTGGCCTTATATGCCAAATTACTCATGAAAAGGTTGTCCTTGTTGGATACTCAATGGGAGCAAGAATTGCACTGTACATGGCTTTGAAGTTCAATAAGCAGATTGCTGCTGCTGCACTTATATCTGGAAGTCCAGGACTGCAAGACCCTTACATGAGGATGACCAGGTCTGCCCAAGATGATGCTTTGGCAGAATCACTTC

Fln Alignment:

G5KS2UX02IWCP5___FSIEVLAKVLCGLICQITHEKVVLVGYSMGARIALYMALKFNKQIAAAALISGSPGLQDPYMRMTRSAQDDALAESL
Q15KI9_______________FSMEMIAEALYKLIEQITPGKVTIVGYSMGARIALYMALRFSNKIEGAVVVSGSPGLKDPVARKIRSATDDSKARMM

SSRs (tot: 1)

Start position	End position	Sequence	Length
175	186	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain