SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61604

Length: 254 nt

UniGene Fasta

>sp_v3.0_unigene61604
AATGTCTTTCCATTCAGACTGTTACAAAGGGGAAATTACAGTTAGTGGGTATCACTGCAATGCTTATAGCTTGCAAATATGAAGAAATCTGGCCTCCACAGGTCAATGACTTCATCGACATCTTGCCAAAAGAATACACAGCAGAACAGATGGTGGCTGTGGAGCATACAATTTTAAATCAATTGAAATTCAATCTTACGGTTCCTACTCCATATGTATTCCTCATCAGGTTTCTGAAGGCAGTTGGTCCTGAC

Ace file of the UniGene sp_v3.0_unigene61604

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable G2/mitotic-specific cyclin (Fragment) n=1 Tax=Picea mariana RepID=O65064_PICMA	-	-	3.0e-30	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	CycB1	-	-	2.039e-26	-

Source	Gene names
Sma3	AcCycB1; AcCycB2; At1g76310; At2g26760; At3g11520; At4g37490; At5g06150; B1085F09.20; CHLREDRAFT_147453; CHLREDRAFT_206115; CYC1; CYC1B; CYC2; CYCA1; CYCB; CYCB1-1; CYCB1-2; CYCB1-3; CYCB1-4; CYCB1-5; CYCB1\|CYCB1a\|CYCB1b; CYCB2-1; CYCB2-4; CYCOS1; CYM; Cy

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	regulation of cell growth	GO:0001558	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to gamma radiation	GO:0010332	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Proteasome maturation factor UMP1	IPR008012	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin A, G2/mitotic-specific	IPR015453	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11520.1	" CYCB1;3, CYC2 CYCLIN B1;3 chr3:3625475-3627139 REVERSE LENGTH=414"	5.0e-27	56%
RefSeq	Arabidopsis thaliana	NP_187759.2	cyclin-B1-3 [Arabidopsis thaliana]	7.0e-27	56%
RefSeq	Populus trichocarpa	XP_002298451.1	predicted protein, partial [Populus trichocarpa]	5.0e-28	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: Distance to subject end: 105 aas, your sequence is shorter than subject: 84 - 465

Fln protein: CLSIQTVTKGKLQLVGITAMLIACKYEEIWPPQVNDFIDILPKEYTAEQMVAVEHTILNQLKFNLTVPTPYVFLIRFLKAVGPD

Protein Length: 85

Fln nts: AATGTCTTTCCATTCAGACTGTTACAAAGGGGAAATTACAGTTAGTGGGTATCACTGCAATGCTTATAGCTTGCAAATATGAAGAAATCTGGCCTCCACAGGTCAATGACTTCATCGACATCTTGCCAAAAGAATACACAGCAGAACAGATGGTGGCTGTGGAGCATACAATTTTAAATCAATTGAAATTCAATCTTACGGTTCCTACTCCATATGTATTCCTCATCAGGTTTCTGAAGGCAGTTGGTCCTGAC

Fln Alignment:

G5KS2UX02I6KC3___LSIQTVTKGKLQLVGITAMLIACKYEEIWPPQVNDFIDILPKEYTAEQMVAVEHTILNQLKFNLTVPTPYVFLIRFLKAVGPD
D5AC16_______________LSIQRVSRNNFQLVGTTAMLLASKYEEIWAPKVDEFLDILENNYERKHVLVMEKEMLNKLKFHLTVPTPYVFLVRFLKAAGSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain