SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61573

Length: 265 nt

UniGene Fasta

>sp_v3.0_unigene61573
AATGTTTATTAGCAGCTTCCATTTCCAATATTATTGGGTGGCTTGACATTTTTTTTGCTAAGGATTCTTTATTTTTATACAGCGGAAGATTGTTCACAGGGTATGGAGTTGGGGTTATCTCATTTGCTGAACCTGTATACACATCTGAGATAGCACCAAAGCACCTTTGAGGAGGTCTTCGGGTAGTAAATCAGTTGGACCAAAATGAGATCATAGACCTCTAATACAAAGTTCGGTATGAGGTATATACTTCCTACCCACATGA

Ace file of the UniGene sp_v3.0_unigene61573

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integral membrane protein n=1 Tax=Beta vulgaris RepID=Q39416_BETVU	-	-	7.0e-15	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Solute carrier family 2, facilitated glucose transporter member 8	-	-	8.799e-08	-

Source	Gene names
Sma3	10A19I.3; At1g19450; At1g75220; F18O14.22; F22H5.6; GSVIVT00014605001; GSVIVT00024920001; OJ1781_H11.17; OSJNBa0017N18.5; Os05g0567800; Os05g0579000; OsI_21022; OsI_21023; OsI_21120; OsJ_19581; OsJ_19582; OsJ_19664; POPTRDRAFT_756426; POPTRDRAFT_764739; R

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75220.1	Major facilitator superfamily protein chr1:28229412-28232606 REVERSE LENGTH=487	1.0e-19	62%
RefSeq	Arabidopsis thaliana	NP_177658.1	sugar transporter ERD6-like 6 [Arabidopsis thaliana]	2.0e-19	62%
RefSeq	Populus trichocarpa	XP_002301864.1	predicted protein [Populus trichocarpa]	2.0e-19	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUP5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 280 aas, your sequence is shorter than subject: 56 - 489

Fln protein: CLLAASISNIIGWLDIFFAKDSLFLYSGRLFTGYGVGVISFAEPVYTSEIAPKHL*

Protein Length: 57

Fln nts: AATGTTTATTAGCAGCTTCCATTTCCAATATTATTGGGTGGCTTGACATTTTTTTTGCTAAGGATTCTTTATTTTTATACAGCGGAAGATTGTTCACAGGGTATGGAGTTGGGGTTATCTCATTTGCTGAACCTGTATACACATCTGAGATAGCACCAAAGCACCTTTGAGGAGGTCTTCGGGTAGTAAATCAGTTGGACCAAAATGAGATCATAGACCTCTAATACAAAGTTCGGTATGAGGTATATACTTCCTACCCACATGA

Fln Alignment:

G5KS2UX02JJQGD___LLAASISNIIGWLDIFFAKDSLFLYSGRLFTGYGVGVISFAEPVYTSEIAPKHL*GGLRVVNQL
A9NUP5_______________LLVASIPNILGWFAISFAKSSLFLYIGRLLTGFGVGVISFTVPVYIAEIAPKHLRGSLGTINML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain