SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61516

Length: 182 nt

UniGene Fasta

>sp_v3.0_unigene61516
AATGTTACAATCAAATATCTGCAGAACAATGTCCACTAAAGCTCTTAGTGGTGCCAAATACTTCGTCACCTTCATCGATGACTGCTCCAGGAAAACTTGGATTTATTCTCTAAAAACCAAGGATGAGGTTTTCTGTCGATTCAAAGAGTTCAAGGCTCTAGTGGAGAATCTGACTGGAAAGA

Ace file of the UniGene sp_v3.0_unigene61516

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GK15001 gene product from transcript GK15001-RA	-	-	5.0e-12	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Retrotransposon Tto1 DNA	-	-	3.899e-06	-

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 212 aas, your sequence is shorter than subject: 60 - 407

Fln protein: MLQSNICRTMSTKALSGAKYFVTFIDDCSRKTWIYSLKTKDEVFCRFKEFKALVENLTGK

Protein Length: 61

Fln nts: AATGTTACAATCAAATATCTGCAGAACAATGTCCACTAAAGCTCTTAGTGGTGCCAAATACTTCGTCACCTTCATCGATGACTGCTCCAGGAAAACTTGGATTTATTCTCTAAAAACCAAGGATGAGGTTTTCTGTCGATTCAAAGAGTTCAAGGCTCTAGTGGAGAATCTGACTGGAAAGA

Fln Alignment:

G5KS2UX02IT723___MLQSNICRTMSTKALSGAKYFVTFIDDCSRKTWIYSLKTKDEVFCRFKEFKALVENLTGK
B8LKX7_______________LVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain