SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61471

Length: 301 nt

UniGene Fasta

>sp_v3.0_unigene61471
AATGTTACTCGAATCCAATAACGTCGAGGCACCTCTGCTTGAGGGGATTACTGAAGACAAGGAGAGGATACCAGAGAGCTGCCATAGCGGCTCGATATTGGTTGTTCTGATCAGTGCTTCTGTTGTTGTGTTGGGTTCAGTTGGATTCGGCTTTAGTGTGGGTTTCTCTTCTCCAACAGAGTCTGGGATCATAGAGGATCTTGGCCTCACCTTATCTCAGTACTCTACGTTTGGTTCTCTGCTAACAATTGGTGCCATGATGGGTGCAATAATGAGTGGCTATATTGCAGACTACCTTGGT

Ace file of the UniGene sp_v3.0_unigene61471

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sugar transporter ERD6-like 6 [Arabidopsis thaliana] sp\|Q9FRL3.1\|ERDL6_ARATH RecName: Full=Sugar transporter ERD6-like 6 gb\|AAG12689.1\|AC025814_13 integral membrane protein, putative; 33518-36712 [Arabidopsis thaliana] gb\|AAL06513.1\|AF412060_1 At1g75220/F	-	-	2.0e-08	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Chromosome chr14 scaffold_164, whole genome shotgun sequence	-	-	2.207e-11	-

Source	Gene names
Sma3	10A19I.3; At1g19450; At1g75220; At5g18840; F17K4.90; F18O14.22; F22H5.6; GSVIVT00006081001; GSVIVT00006082001; GSVIVT00006098001; GSVIVT00006100001; GSVIVT00019852001; GSVIVT00024920001; LOC_Os11g42430; OSJNBa0017N18.5; Os05g0579000; OsI_21120; OsI_22030;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75220.1	Major facilitator superfamily protein chr1:28229412-28232606 REVERSE LENGTH=487	9.0e-12	62%
RefSeq	Arabidopsis thaliana	NP_177658.1	sugar transporter ERD6-like 6 [Arabidopsis thaliana]	1.0e-11	62%
RefSeq	Populus trichocarpa	XP_002319570.1	predicted protein [Populus trichocarpa]	3.0e-15	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8F2

Fln msg: Distance to subject end: 388 aas, atg_distance in limit (1-15): atg_distance = 14, your sequence is shorter than subject: 100 - 501

Fln protein: MLLESNNVEAPLLEGITEDKERIPESCHSGSILVVLISASVVVLGSVGFGFSVGFSSPTESGIIEDLGLTLSQYSTFGSLLTIGAMMGAIMSGYIADYLG

Protein Length: 101

Fln nts: A_-_ATGTTACTCGAATCCAATAACGTCGAGGCACCTCTGCTTGAGGGGATTACTGAAGACAAGGAGAGGATACCAGAGAGCTGCCATAGCGGCTCGATATTGGTTGTTCTGATCAGTGCTTCTGTTGTTGTGTTGGGTTCAGTTGGATTCGGCTTTAGTGTGGGTTTCTCTTCTCCAACAGAGTCTGGGATCATAGAGGATCTTGGCCTCACCTTATCTCAGTACTCTACGTTTGGTTCTCTGCTAACAATTGGTGCCATGATGGGTGCAATAATGAGTGGCTATATTGCAGACTACCTTGGT

Fln Alignment:

G5KS2UX02IPICG___PTESGIIEDLGLTLSQYSTFGSLLTIGAMMGAIMSGYIADYLG
D5A8F2_______________PVQSAMMEDLGLTMSQYSTFGSLLTIGAMVGAILSGRIADFLG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain