SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61449

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene61449
AATGTCGATACAATGGACAGGAAGTAAAAGAAGAAGAAGGACAAGTGTTTGTGTAAATTCGAATTCACAACTGATTGCAATGGACTCTGCTCGAATCAAAGTCGTGGGAATTGGCGGAGGAGGAAACAATGCTGTCAATCGAATGATTCGAGGCAGACTCCAGGGAGTTGAATTTTATGCCATAAATACAGATGCTCAAGCCCTGCTACAGTCAGCTGCAGATGAACGTATTCAAATCG

Ace file of the UniGene sp_v3.0_unigene61449

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FtsZ-like protein [Nicotiana tabacum]	-	-	1.0e-07	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Plastid division protein FtsZ	-	-	2.66e-10	-

Source	Gene names
Sma3	At5g55280; CpFtsZ-cy; FTSZ; FtsZ; FtsZ1; GSVIVT00027244001; H1005F08.7; MCO15.23; MICPUCDRAFT_17294; MICPUN_108088; NbFtsZ1; OSJNBa0087O24.6; OSTLU_3589; Os04g0665400; OsI_17816; OsJ_16530; Ot08g02180; PHYPADRAFT_196781; POPTRDRAFT_642244; RCOM_0547150; T

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	barrier septum assembly	GO:0000917	Biological Process	-
Sma3	microtubule-based process	GO:0007017	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	chloroplast fission	GO:0010020	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cell division protein FtsZ	IPR000158	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVJ2

Fln msg: Distance to subject end: 300 aas, your sequence is shorter than subject: 79 - 439

Fln protein: MSIQWTGSKRRRRTSVCVNSNSQLIAMDSARIKVVGIGGGGNNAVNRMIRGRLQGVEFYAINTDAQALLQSAADERIQI

Protein Length: 80

Fln nts: AATGTCGATACAATGGACAGGAAGTAAAAGAAGAAGAAGGACAAGTGTTTGTGTAAATTCGAATTCACAACTGATTGCAATGGACTCTGCTCGAATCAAAGTCGTGGGAATTGGCGGAGGAGGAAACAATGCTGTCAATCGAATGATTCGAGGCAGACTCCAGGGAGTTGAATTTTATGCCATAAATACAGATGCTCAAGCCCTGCTACAGTCAGCTGCAGATGAACGTATTCAAATCG

Fln Alignment:

G5KS2UX02J3WCS___GSKRRRRTSVCVNSNSQLIAMDSARIKXXXXXXXXXXXXXRMIRGRLQGVEFYAINTDAQALLQSAADERIQI
A9NVJ2_______________GSKVRR---VCRSSYSPFRQMESARIKVVGIGGGGNNAVNRMIAAGLHGVEFYAINTDAQALLQSAAENPVQI

SSRs (tot: 1)

Start position	End position	Sequence	Length
28	39	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain