SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61440

Length: 402 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene61440
GACAGCAGCTCGGCCATGCTGGTGCGCGCGCAGCGCCTCATGGAGATGTCGATGATGTGCCTGCAGAGGGAATTTCACCGAATTCTGACTACGAATGTCAAGCCGAACTTGGCGCCGGAAGATGGCTTGTCGGACGACGGGTCGACGGACGAGGACGGGAGCAACGGCAGCGGCAGTGCCAGTCGGGTCGGAATTCTAACGCCGACTGGATTTGCGAAATCGACATGATGCCGTTCGATGCCGAGCACGATCTTCGCAGCATAGCTGAGCGCATGGTGACCGCTGGGTATGGGAAAGAGTGCGTTCGAATTTACGGGCTGACCAGAAAGTCTGTAATTGAAGAGTGTCTGTACAAAATTGGCGTTGAGCGGTTGAGCAAGGGTCACGTGCACAAGACACATT

Ace file of the UniGene sp_v3.0_unigene61440 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Sma3	exocyst	GO:0000145	Cellular Component	0.0	-
Sma3	exocytosis	GO:0006887	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002312061.1	predicted protein [Populus trichocarpa]	2.0e-16	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF7

Fln msg: Separated hits, possible frame ERROR between 183 and 192, Distance to subject end: 373 aas, your sequence is shorter than subject: 134 - 627

Fln protein: DSSSAMLVRAQRLMEMSMMCLQREFHRILTTNVKPNLAPEDGLSDDGSTDEDGSNGSGSAxxxxNSNADWICEIDMMPFDAEHDLRSIAERMVTAGYGKECVRIYGLTRKSVIEECLYKIGVERLSKGHVHKTH

Protein Length: 135

Fln nts: GACAGCAGCTCGGCCATGCTGGTGCGCGCGCAGCGCCTCATGGAGATGTCGATGATGTGCCTGCAGAGGGAATTTCACCGAATTCTGACTACGAATGTCAAGCCGAACTTGGCGCCGGAAGATGGCTTGTCGGACGACGGGTCGACGGACGAGGACGGGAGCAACGGCAGCGGCAGTGCCAGxxxxxxxxxGAATTCTAACGCCGACTGGATTTGCGAAATCGACATGATGCCGTTCGATGCCGAGCACGATCTTCGCAGCATAGCTGAGCGCATGGTGACCGCTGGGTATGGGAAAGAGTGCGTTCGAATTTACGGGCTGACCAGAAAGTCTGTAATTGAAGAGTGTCTGTACAAAATTGGCGTTGAGCGGTTGAGCAAGGGTCACGTGCACAAGACACATT

Fln Alignment:

G5KS2UX02I6G0W___SSSAMLVRAQRLMEMSMMCLQREFHRILTTNVKPNLAPEDGLSDDGSTDEDGSNGSGSASxxxNSNADWICEIDMMPFDAEHDLRSIAERMVTAGYGKECVRIYGLTRKSVIEECLYKIGVERLSKGHVHK
A9NUF7_______________SSSAKLVRAQRLMEISMARLEKEFHRILSNNVKPTMELDDGNSSDGSSDDGSEDEDGSSSxxxNLNANEICEIDMMPLDAVQDLRSIAKRMVAGGYGSECVRIYGMTRKSVIEGCLNRIGVDWLSASDVQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain