SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61424

Length: 231 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene61424
GGAGAATATGGATCGGGGAAACAGAGGAGGAGGAGGCAGAGGGCAAGATGGTTCTCAAAGAGGAGAAAGCGATCGAATTGATGCTCTGGGTCGATTGTTGTCATCTGTTTTGCGGCATAGAGCTGTTGAATTGAAATTGAACATTCGAAATGATGGATATGTGGCAGTTGAAGAGCTGTTAAAGCTGAATGTAAAAACTCATGCACGAGTTCCCCTTTACTCTCACACATT

Ace file of the UniGene sp_v3.0_unigene61424 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative tRNA 2'phosphotransferase [Arabidopsis thaliana] gb\|AEC10539.1\| putative tRNA 2'phosphotransferase [Arabidopsis thaliana]	-	-	3.0e-12	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%

Source	Gene names
Sma3	At2g45330; At5g23600; GSVIVT00026415001; GSVIVT00026417001; OsI_21514; OsJ_20023; P0001H02.6; P0679C08.44; POPTRDRAFT_1071929; RCOM_1611600;

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring phosphorus-containing groups	GO:0016772	Molecular Function	0.0	-
Sma3	tRNA splicing, via endonucleolytic cleavage and ligation	GO:0006388	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphotransferase KptA/Tpt1	IPR002745	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45330.1	emb1067 RNA 2'-phosphotransferase, Tpt1 / KptA family chr2:18686340-18687874 FORWARD LENGTH=289	3.0e-17	66%
RefSeq	Arabidopsis thaliana	NP_001031541.1	putative tRNA 2'phosphotransferase [Arabidopsis thaliana]	3.0e-17	66%
RefSeq	Populus trichocarpa	XP_002302400.1	predicted protein [Populus trichocarpa]	7.0e-19	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLX4

Fln msg: Distance to subject end: 154 aas, your sequence is shorter than subject: 76 - 574

Fln protein: ENMDRGNRGGGGRGQDGSQRGESDRIDALGRLLSSVLRHRAVELKLNIRNDGYVAVEELLKLNVKTHARVPLYSHT

Protein Length: 77

Fln nts: GGAGAATATGGATCGGGGAAACAGAGGAGGAGGAGGCAGAGGGCAAGATGGTTCTCAAAGAGGAGAAAGCGATCGAATTGATGCTCTGGGTCGATTGTTGTCATCTGTTTTGCGGCATAGAGCTGTTGAATTGAAATTGAACATTCGAAATGATGGATATGTGGCAGTTGAAGAGCTGTTAAAGCTGAATGTAAAAACTCATGCACGAGTTCCCCTTTACTCTCACACATT

Fln Alignment:

G5KS2UX02HJTCX___DRIDALGRLLSSVLRHRAVELKLNIRNDGYVAVEELLKLNVKTHARVPLYSHT
B8LLX4_______________DQINALGRSLSSVLRHRADELKLNIRSDGYVAVKDLLKLNVKTPARVPLNSHS

SSRs (tot: 1)

Start position	End position	Sequence	Length
196	208	CCT CCT CCT CCT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain