SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61401

Length: 305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene61401
TAGCTGCAGTTTCAGCAGGCCTTGAAATAGTTCAAAGCATTGCAGACAAAGATTCAGAGAGTTCAGAAGGTGAAAAGGATGAAAATGATAGCCTTTTTGGCAGCTCTGCACTTCAGTGGTATGTATAAGCCCAGCATAATTGTGTGCCCAGTAACTCTCTTACGCCAATGGAGACGGGAAGTCCGAAAGTGGTACCCACACTTCCATGTTGCAATATTGCATGATTCTGTTCCAGTATCTTCCTGGAAGAAAAAGAAAGCAAAACAAATAAAGGGTGATGATGAAGATGAACCCATATTAACATT

Ace file of the UniGene sp_v3.0_unigene61401 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9H8P5_POPTR	-	-	4.0e-17	71%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	70%

Source	Gene names
Sma3	At2g18760; CHR1450; CHR901; GSVIVT00028565001; Ot02g06050; PHYPADRAFT_77632; POPTRDRAFT_761357; RCOM_0260090; VITISV_002502;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	response to gamma radiation	GO:0010332	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G18760.1	CHR8 chromatin remodeling 8 chr2:8129154-8133502 FORWARD LENGTH=1187	1.0e-21	73%
RefSeq	Arabidopsis thaliana	NP_179466.1	DNA excision repair protein E [Arabidopsis thaliana]	2.0e-21	73%
RefSeq	Populus trichocarpa	XP_002307656.1	chromatin remodeling complex subunit [Populus trichocarpa]	1.0e-21	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1LYM1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 725 aas, your sequence is shorter than subject: 101 - 1225

Fln protein: *LQFQQALK*FKALQTKIQRVQKVKRMKMIAFLAALHFSGMYKPSIIVCPVTLLRQWRREVRKWYPHFHVAILHDSVPVSSWKKKKAKQIKGDDEDEPILT

Protein Length: 102

Fln nts: TAGCTGCAGTTTCAGCAGGCCTTGAAATAGTTCAAAGCATTGCAGACAAAGATTCAGAGAGTTCAGAAGGTGAAAAGGATGAAAATGATAGCCTTTTTGGCAGCTCTGCACTTCAGTGGTATGTATAAGCCCAGCATAATTGTGTGCCCAGTAACTCTCTTACGCCAATGGAGACGGGAAGTCCGAAAGTGGTACCCACACTTCCATGTTGCAATATTGCATGATTCTGTTCCAGTATCTTCCTGGAAGAAAAAGAAAGCAAAACAAATAAAGGGTGATGATGAAGATGAACCCATATTAACATT

Fln Alignment:

G5KS2UX02J6G09___KRMKMIAFLAALHFSGMYKPSIIVCPVTLLRQWRREVRKWYPHFHVAILHDSVPVSS
I1LYM1_______________KTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain