SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61359

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene61359
AATGTCCAAATGTTATGGAATTGTGGGATTCATCAAGTTTTTGGAGCCTTATTACATGATACTTGTTACAAAACGAAGGCAAATTGGAACTATTTGTGGTCATATTGTATATGGAATCAGCGAGAGTCAGATAATTACAGTTCCACATTCTACTGTTTTAACAAACTTGGCAAATTCAAAAGATGAGCAAAGATACAAGAAGCTCCTGTCTACGGTGGATCTTACTAAGGACTTCTTTTTCA

Ace file of the UniGene sp_v3.0_unigene61359

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gb\|AAC25523.1 n=4 Tax=Arabidopsis RepID=Q9LJG4_ARATH	-	-	4.0e-28	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Sma3	Phosphoinositide 5-phosphatase, putative	-	-	1.104e-08	-

Source	Gene names
Sma3	AT3G14205; At1g17340; At1g22620; At3g14205; At3g43220; At5g20840; F12K8.3; F7K15_70; GSVIVT00002161001; GSVIVT00016372001; GSVIVT00034019001; LOC_Os03g08430; OSJNBa0032G08.19; Os03g0182400; Os06g0195600; Os08g0109100; OsI_10271; OsI_22005; OsI_27545; OsJ_

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	GO:0004439	Molecular Function	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Synaptojanin, N-terminal	IPR002013	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G14205.1	Phosphoinositide phosphatase family protein chr3:4716008-4720524 REVERSE LENGTH=808	5.0e-35	66%
RefSeq	Arabidopsis thaliana	NP_566481.1	Phosphoinositide phosphatase family protein [Arabidopsis thaliana]	6.0e-35	66%
RefSeq	Populus trichocarpa	XP_002333728.1	predicted protein [Populus trichocarpa]	6.0e-36	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL30

Fln msg: Distance to subject end: 448 aas, your sequence is shorter than subject: 80 - 573

Fln protein: MSKCYGIVGFIKFLEPYYMILVTKRRQIGTICGHIVYGISESQIITVPHSTVLTNLANSKDEQRYKKLLSTVDLTKDFFF

Protein Length: 81

Fln nts: AATGTCCAAATGTTATGGAATTGTGGGATTCATCAAGTTTTTGGAGCCTTATTACATGATACTTGTTACAAAACGAAGGCAAATTGGAACTATTTGTGGTCATATTGTATATGGAATCAGCGAGAGTCAGATAATTACAGTTCCACATTCTACTGTTTTAACAAACTTGGCAAATTCAAAAGATGAGCAAAGATACAAGAAGCTCCTGTCTACGGTGGATCTTACTAAGGACTTCTTTTTCA

Fln Alignment:

G5KS2UX02H9X0H___MSKCYGIVGFIKFLEPYYMILVTKRRQIGTICGHIVYGISESQIITVPHSTVLTNLANSKDEQRYKKLLSTVDLTKDFFF
B8LL30_______________MTVIYGVVGAIKLLAGTYVFVITSRKQVGMHQGFPVFQIMSLKFLSCNKALKLSTAEEKRDEAYFVSLLKIVETSSGLYF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain