SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61345

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene61345
ATTGATCTGATACAGAGTCCTGGGCAGAAGCATTCATTTACTTTTGACAAGGTATTTAGCCATGATGCCAGGCAAGAGGAGGTGTTTGTGGAGATTTCACAGCTTGTTCAAAGTGCTCTTGATGGATACAAGGTTTGCATCTTTGCCTATGGACAAACGGGCTCTGGGAAAACGTACACGATGCTTGGTAATCCAGATTTCCTTGAACACAAAGGACTTATACCAAGATCTTTGGAGCAAATGTGGTCCTGGGTTGAATATCAAGTAGACAAGATATCTTTGGAGCCACAACATT

Ace file of the UniGene sp_v3.0_unigene61345 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin 1 [Arabidopsis thaliana] sp\|Q07970.1\|ATK1_ARATH RecName: Full=Kinesin-1; AltName: Full=Kinesin-like protein A dbj\|BAA01972.1\| kinesin-like motor protein heavy chain [Arabidopsis thaliana] emb\|CAA17546.1\| kinesin-related protein katA [Arabidopsis t	-	-	6.0e-30	78%
FL-Next	sp=Kinesin-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%
Sma3	Kinesin-1	-	-	1.033e-07	-

Source	Gene names
Sma3	AT4g05190; ATK1; ATK2; ATK3; At1g63640; At1g73860; At2g47500; At4g05190; At4g21270; At4g27180; At5g54670; B1317D11.110; B21F5.3; CHLREDRAFT_120667; F24D7.17; F25P22.28; F2P9.27; F7J7.210; GSVIVT00000424001; GSVIVT00012554001; GSVIVT00012976001; GSVIVT0001

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	minus-end kinesin complex	GO:0005872	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	spindle microtubule	GO:0005876	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule binding	GO:0008017	Molecular Function	-
Sma3	minus-end-directed microtubule motor activity	GO:0008569	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	protein import into nucleus	GO:0006606	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	anastral spindle assembly involved in male meiosis	GO:0009971	Biological Process	-
Sma3	spindle assembly	GO:0051225	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Tetratricopeptide, MLP1/MLP2-like	IPR012929	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G21270.1	ATK1, KATA, KATAP kinesin 1 chr4:11329579-11333884 REVERSE LENGTH=793	1.0e-36	78%
RefSeq	Arabidopsis thaliana	NP_193859.1	kinesin 1 [Arabidopsis thaliana]	2.0e-36	78%
RefSeq	Populus trichocarpa	XP_002316704.1	predicted protein [Populus trichocarpa]	5.0e-39	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q07970

Fln msg: Distance to subject end: 230 aas, your sequence is shorter than subject: 98 - 793

Fln protein: IDLIQSPGQKHSFTFDKVFSHDARQEEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMLGNPDFLEHKGLIPRSLEQMWSWVEYQVDKISLEPQH

Protein Length: 99

Fln nts: ATTGATCTGATACAGAGTCCTGGGCAGAAGCATTCATTTACTTTTGACAAGGTATTTAGCCATGATGCCAGGCAAGAGGAGGTGTTTGTGGAGATTTCACAGCTTGTTCAAAGTGCTCTTGATGGATACAAGGTTTGCATCTTTGCCTATGGACAAACGGGCTCTGGGAAAACGTACACGATGCTTGGTAATCCAGATTTCCTTGAACACAAAGGACTTATACCAAGATCTTTGGAGCAAATGTGGTCCTGGGTTGAATATCAAGTAGACAAGATATCTTTGGAGCCACAACATT

Fln Alignment:

G5KS2UX02ITGEY___IDLIQSPGQKHSFTFDKVFSHDARQEEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMLGNPDFLEHKGLIPRSLEQMW
Q07970_______________VDLVQS-GNKHPFTFDKVFNHEASQEEVFFEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPEAPDQKGLIPRSLEQIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain